miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6885 5' -54.5 NC_001875.2 + 2231 0.67 0.881847
Target:  5'- uCCUucaCGUCCAGuUGCuGCCGCAGCAAc -3'
miRNA:   3'- -GGGcacGCAGGUU-ACG-UGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 5917 0.66 0.926344
Target:  5'- gCCGgcaugGCGUUgGGUaGCGCCGC-GCAGg -3'
miRNA:   3'- gGGCa----CGCAGgUUA-CGUGGCGuUGUU- -5'
6885 5' -54.5 NC_001875.2 + 6290 1.08 0.003555
Target:  5'- gCCCGUGCGUCCAAUGCACCGCAACAAg -3'
miRNA:   3'- -GGGCACGCAGGUUACGUGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 6947 0.68 0.834616
Target:  5'- gUCGUGCGU-----GCGCCGCGACAu -3'
miRNA:   3'- gGGCACGCAgguuaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 8506 0.7 0.741405
Target:  5'- gUCCGUGUGggcgCCGc-GCACUGCAACGc -3'
miRNA:   3'- -GGGCACGCa---GGUuaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 16524 0.69 0.799161
Target:  5'- aCCCGUGU-UCUcgaaAAUGCGCCGCcACGu -3'
miRNA:   3'- -GGGCACGcAGG----UUACGUGGCGuUGUu -5'
6885 5' -54.5 NC_001875.2 + 20958 0.73 0.596189
Target:  5'- gCCGUccagcgcaaacGCGUCgCAAUGC-CCGCAGCGc -3'
miRNA:   3'- gGGCA-----------CGCAG-GUUACGuGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 22817 0.77 0.342591
Target:  5'- gCCGUGCgGUCCGAcgGCACCGuCGGCGg -3'
miRNA:   3'- gGGCACG-CAGGUUa-CGUGGC-GUUGUu -5'
6885 5' -54.5 NC_001875.2 + 25814 0.66 0.931704
Target:  5'- uCUCG-GCGcccgCCGA-GCACUGCAACGc -3'
miRNA:   3'- -GGGCaCGCa---GGUUaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 34761 0.69 0.789876
Target:  5'- gCCGUGCGUguUCAAUGUaaguGCCGCAuucgucGCAc -3'
miRNA:   3'- gGGCACGCA--GGUUACG----UGGCGU------UGUu -5'
6885 5' -54.5 NC_001875.2 + 35784 0.7 0.731369
Target:  5'- uCCauaGUGCGUgCCGGUGCGCaCGCGcuugccGCGAa -3'
miRNA:   3'- -GGg--CACGCA-GGUUACGUG-GCGU------UGUU- -5'
6885 5' -54.5 NC_001875.2 + 36285 0.73 0.575342
Target:  5'- aCgGaGCG-CCAAUGCGCCGCAGCc- -3'
miRNA:   3'- gGgCaCGCaGGUUACGUGGCGUUGuu -5'
6885 5' -54.5 NC_001875.2 + 36560 0.68 0.843015
Target:  5'- cCCCGUGUGcauaCCGAcGCA-CGCGGCGAg -3'
miRNA:   3'- -GGGCACGCa---GGUUaCGUgGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 36787 0.69 0.789876
Target:  5'- aCCCGUcgGCGUCaaucugcaCGGUGCgcguuacgcGCCGCGGCAGu -3'
miRNA:   3'- -GGGCA--CGCAG--------GUUACG---------UGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 39011 0.66 0.931704
Target:  5'- aUUGUGCGcCUuacuGAUGCgACCGCGGCGc -3'
miRNA:   3'- gGGCACGCaGG----UUACG-UGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 39059 0.69 0.780442
Target:  5'- aCCGcaaGCGcauggCCAuuGUGCGCCGCGGCGu -3'
miRNA:   3'- gGGCa--CGCa----GGU--UACGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 39189 0.68 0.843015
Target:  5'- -gCGUgGCGUUuaCGGUGCGCCGCuACAAc -3'
miRNA:   3'- ggGCA-CGCAG--GUUACGUGGCGuUGUU- -5'
6885 5' -54.5 NC_001875.2 + 41835 0.73 0.585748
Target:  5'- gUUGcGCGUCCAGUugccGCGCCGCGGCGg -3'
miRNA:   3'- gGGCaCGCAGGUUA----CGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 42500 0.73 0.544407
Target:  5'- gCCGU-CGUCCGcGUGCGCCGCAAa-- -3'
miRNA:   3'- gGGCAcGCAGGU-UACGUGGCGUUguu -5'
6885 5' -54.5 NC_001875.2 + 44013 0.71 0.680031
Target:  5'- gCCGUGC--CCAGcgugcUGUACCGCAGCAc -3'
miRNA:   3'- gGGCACGcaGGUU-----ACGUGGCGUUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.