Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 79626 | 0.67 | 0.874525 |
Target: 5'- gUCGcGCGUCCAGuuUGCACgGCGcGCAGu -3' miRNA: 3'- gGGCaCGCAGGUU--ACGUGgCGU-UGUU- -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 54742 | 0.69 | 0.780442 |
Target: 5'- gCCGUGCGggcgcaCCGccgGCACCGcCAGCGc -3' miRNA: 3'- gGGCACGCa-----GGUua-CGUGGC-GUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 74001 | 0.69 | 0.789876 |
Target: 5'- gCCCG-GCGgaCCGGUacgagaGCACCGCGGCGc -3' miRNA: 3'- -GGGCaCGCa-GGUUA------CGUGGCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 36787 | 0.69 | 0.789876 |
Target: 5'- aCCCGUcgGCGUCaaucugcaCGGUGCgcguuacgcGCCGCGGCAGu -3' miRNA: 3'- -GGGCA--CGCAG--------GUUACG---------UGGCGUUGUU- -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 6947 | 0.68 | 0.834616 |
Target: 5'- gUCGUGCGU-----GCGCCGCGACAu -3' miRNA: 3'- gGGCACGCAgguuaCGUGGCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 48826 | 0.68 | 0.843015 |
Target: 5'- cUCCGcGCG-CUAcgGCGCCGCuuCAAg -3' miRNA: 3'- -GGGCaCGCaGGUuaCGUGGCGuuGUU- -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 39189 | 0.68 | 0.843015 |
Target: 5'- -gCGUgGCGUUuaCGGUGCGCCGCuACAAc -3' miRNA: 3'- ggGCA-CGCAG--GUUACGUGGCGuUGUU- -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 107827 | 0.68 | 0.859202 |
Target: 5'- gCCGagcccGCGcCCGGUGCGCCuuGCGACGc -3' miRNA: 3'- gGGCa----CGCaGGUUACGUGG--CGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 110393 | 0.67 | 0.866975 |
Target: 5'- gCUCGUGCGUgCCcguggagaucaAGUGCccguucaacuACCGCGACAc -3' miRNA: 3'- -GGGCACGCA-GG-----------UUACG----------UGGCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 39059 | 0.69 | 0.780442 |
Target: 5'- aCCGcaaGCGcauggCCAuuGUGCGCCGCGGCGu -3' miRNA: 3'- gGGCa--CGCa----GGU--UACGUGGCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 90400 | 0.7 | 0.75134 |
Target: 5'- aCCG-GCG-CCuGUGCGCgCGCAGCGg -3' miRNA: 3'- gGGCaCGCaGGuUACGUG-GCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 104151 | 0.7 | 0.741405 |
Target: 5'- uCCCGUggcgauagacGCGUCCGAcauUGUcaacuaucGCCGCGGCAu -3' miRNA: 3'- -GGGCA----------CGCAGGUU---ACG--------UGGCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 22817 | 0.77 | 0.342591 |
Target: 5'- gCCGUGCgGUCCGAcgGCACCGuCGGCGg -3' miRNA: 3'- gGGCACG-CAGGUUa-CGUGGC-GUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 42500 | 0.73 | 0.544407 |
Target: 5'- gCCGU-CGUCCGcGUGCGCCGCAAa-- -3' miRNA: 3'- gGGCAcGCAGGU-UACGUGGCGUUguu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 36285 | 0.73 | 0.575342 |
Target: 5'- aCgGaGCG-CCAAUGCGCCGCAGCc- -3' miRNA: 3'- gGgCaCGCaGGUUACGUGGCGUUGuu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 41835 | 0.73 | 0.585748 |
Target: 5'- gUUGcGCGUCCAGUugccGCGCCGCGGCGg -3' miRNA: 3'- gGGCaCGCAGGUUA----CGUGGCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 44013 | 0.71 | 0.680031 |
Target: 5'- gCCGUGC--CCAGcgugcUGUACCGCAGCAc -3' miRNA: 3'- gGGCACGcaGGUU-----ACGUGGCGUUGUu -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 35784 | 0.7 | 0.731369 |
Target: 5'- uCCauaGUGCGUgCCGGUGCGCaCGCGcuugccGCGAa -3' miRNA: 3'- -GGg--CACGCA-GGUUACGUG-GCGU------UGUU- -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 116177 | 0.7 | 0.735395 |
Target: 5'- gCCGUGUGUCgAAuguguggcgugcgucUGCACCGCcuCAGg -3' miRNA: 3'- gGGCACGCAGgUU---------------ACGUGGCGuuGUU- -5' |
|||||||
6885 | 5' | -54.5 | NC_001875.2 | + | 8506 | 0.7 | 0.741405 |
Target: 5'- gUCCGUGUGggcgCCGc-GCACUGCAACGc -3' miRNA: 3'- -GGGCACGCa---GGUuaCGUGGCGUUGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home