miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6886 3' -54.3 NC_001875.2 + 6679 1.06 0.005551
Target:  5'- aAAUGAACUUGGCGACGACGGCGCACGc -3'
miRNA:   3'- -UUACUUGAACCGCUGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 103116 0.83 0.17389
Target:  5'- cGUGGcucGCUUGGCGGCGGCGGCGCcCu -3'
miRNA:   3'- uUACU---UGAACCGCUGCUGCCGCGuGc -5'
6886 3' -54.3 NC_001875.2 + 111779 0.81 0.241752
Target:  5'- -cUGGugUcgcUGGUGACGGCGGUGCACGc -3'
miRNA:   3'- uuACUugA---ACCGCUGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 130102 0.79 0.293657
Target:  5'- --cGGAaaUGGCGGCGGCGGCgGCGCGa -3'
miRNA:   3'- uuaCUUgaACCGCUGCUGCCG-CGUGC- -5'
6886 3' -54.3 NC_001875.2 + 91446 0.76 0.413283
Target:  5'- -cUGAGCggcGGCG-CGugGGCGCGCa -3'
miRNA:   3'- uuACUUGaa-CCGCuGCugCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 29796 0.76 0.422262
Target:  5'- --gGGACUgugcgGGCGcUGGCGGCGCAUGg -3'
miRNA:   3'- uuaCUUGAa----CCGCuGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 70190 0.76 0.440568
Target:  5'- --cGAGCcgGGCGGCGACGGCGacCACu -3'
miRNA:   3'- uuaCUUGaaCCGCUGCUGCCGC--GUGc -5'
6886 3' -54.3 NC_001875.2 + 86268 0.75 0.459315
Target:  5'- -cUGGACUUGGCGGCGAUacaGGaGCGCa -3'
miRNA:   3'- uuACUUGAACCGCUGCUG---CCgCGUGc -5'
6886 3' -54.3 NC_001875.2 + 32002 0.75 0.459315
Target:  5'- uGUGAGC--GGCGGCGACGcaGCGCACu -3'
miRNA:   3'- uUACUUGaaCCGCUGCUGC--CGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 47 0.74 0.507936
Target:  5'- uGGUGcucAACUcGGCGGCGGCGGCGaACGa -3'
miRNA:   3'- -UUAC---UUGAaCCGCUGCUGCCGCgUGC- -5'
6886 3' -54.3 NC_001875.2 + 59884 0.74 0.538132
Target:  5'- --cGAGCUUcgcGGCGACaGGCuGCGCGCGg -3'
miRNA:   3'- uuaCUUGAA---CCGCUG-CUGcCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 69233 0.74 0.548338
Target:  5'- --cGGACacGGCGGCGucgaACGGCGCGCu -3'
miRNA:   3'- uuaCUUGaaCCGCUGC----UGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 28661 0.74 0.558603
Target:  5'- uGUGGAac-GGCGGCGugGGCGaCAUGg -3'
miRNA:   3'- uUACUUgaaCCGCUGCugCCGC-GUGC- -5'
6886 3' -54.3 NC_001875.2 + 124884 0.74 0.558603
Target:  5'- --aGcGCgccgUGGCGAUGucGCGGCGCACGc -3'
miRNA:   3'- uuaCuUGa---ACCGCUGC--UGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 130054 0.73 0.568922
Target:  5'- --cGGAaaUGGCGGCGGCGGCG-GCGg -3'
miRNA:   3'- uuaCUUgaACCGCUGCUGCCGCgUGC- -5'
6886 3' -54.3 NC_001875.2 + 130013 0.73 0.579287
Target:  5'- ------aUUGGCGGCGGCGGCgGCAUGc -3'
miRNA:   3'- uuacuugAACCGCUGCUGCCG-CGUGC- -5'
6886 3' -54.3 NC_001875.2 + 129542 0.73 0.589692
Target:  5'- --cGAGCUgcgcGCGGCcACGGCGCGCGc -3'
miRNA:   3'- uuaCUUGAac--CGCUGcUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 5489 0.72 0.621071
Target:  5'- -uUGAACUcGGUGcacagcACGAcCGGCGCACGc -3'
miRNA:   3'- uuACUUGAaCCGC------UGCU-GCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 770 0.72 0.642048
Target:  5'- --gGGGCa--GCuGACGGCGGCGCGCGg -3'
miRNA:   3'- uuaCUUGaacCG-CUGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 48504 0.72 0.642048
Target:  5'- uAAUGGACUauuuUGGCG-CGccgccCGGCGCGCGc -3'
miRNA:   3'- -UUACUUGA----ACCGCuGCu----GCCGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.