miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6886 3' -54.3 NC_001875.2 + 1 0.69 0.783768
Target:  5'- cGUGGGCgcGGCGACagGGgGGUGCACa -3'
miRNA:   3'- uUACUUGaaCCGCUG--CUgCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 47 0.74 0.507936
Target:  5'- uGGUGcucAACUcGGCGGCGGCGGCGaACGa -3'
miRNA:   3'- -UUAC---UUGAaCCGCUGCUGCCGCgUGC- -5'
6886 3' -54.3 NC_001875.2 + 770 0.72 0.642048
Target:  5'- --gGGGCa--GCuGACGGCGGCGCGCGg -3'
miRNA:   3'- uuaCUUGaacCG-CUGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 5489 0.72 0.621071
Target:  5'- -uUGAACUcGGUGcacagcACGAcCGGCGCACGc -3'
miRNA:   3'- uuACUUGAaCCGC------UGCU-GCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 5743 0.66 0.922582
Target:  5'- -uUGA---UGGCGACG-CGGCGCuuGc -3'
miRNA:   3'- uuACUugaACCGCUGCuGCCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 5969 0.66 0.927564
Target:  5'- cGUGAAUgUGGuCGcCGACGGCaggcccaGCGCGu -3'
miRNA:   3'- uUACUUGaACC-GCuGCUGCCG-------CGUGC- -5'
6886 3' -54.3 NC_001875.2 + 6679 1.06 0.005551
Target:  5'- aAAUGAACUUGGCGACGACGGCGCACGc -3'
miRNA:   3'- -UUACUUGAACCGCUGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 6916 0.66 0.933376
Target:  5'- cGUGcGCUcggccgagGGCGugGACcGCGCGCu -3'
miRNA:   3'- uUACuUGAa-------CCGCugCUGcCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 7444 0.68 0.86954
Target:  5'- -cUGcGCgccGGCGauuGCGGCGGUGUACGg -3'
miRNA:   3'- uuACuUGaa-CCGC---UGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 8986 0.68 0.845832
Target:  5'- --cGAACgggUGGCaGCGaaacacgucGCGGCGCACc -3'
miRNA:   3'- uuaCUUGa--ACCGcUGC---------UGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 10454 0.7 0.734972
Target:  5'- ---uGACgcGGCG-CGGCGGCGCGCu -3'
miRNA:   3'- uuacUUGaaCCGCuGCUGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 11153 0.71 0.694187
Target:  5'- cGAUGGAC--GGcCGGuCGAUGGCGCACa -3'
miRNA:   3'- -UUACUUGaaCC-GCU-GCUGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 11524 0.68 0.845832
Target:  5'- -uUGGGCUUGacuuCGGUGACGGUGCGCa -3'
miRNA:   3'- uuACUUGAACc---GCUGCUGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 11978 0.66 0.922582
Target:  5'- --aGcAC-UGGCGACGGCGuuGgGCGCGg -3'
miRNA:   3'- uuaCuUGaACCGCUGCUGC--CgCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 14546 0.66 0.938397
Target:  5'- gAGUGAGC-UGGCGcACG-CGGCcaucgugaaGCGCa -3'
miRNA:   3'- -UUACUUGaACCGC-UGCuGCCG---------CGUGc -5'
6886 3' -54.3 NC_001875.2 + 16072 0.7 0.76461
Target:  5'- uGUGGACgcacacGGCGcCGGuuuCGGCGCACGc -3'
miRNA:   3'- uUACUUGaa----CCGCuGCU---GCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 17793 0.68 0.845832
Target:  5'- -uUGuACaaGGUGGCGACGGUGC-CGu -3'
miRNA:   3'- uuACuUGaaCCGCUGCUGCCGCGuGC- -5'
6886 3' -54.3 NC_001875.2 + 18674 0.69 0.793137
Target:  5'- cGGUGcGGCUgcugGGCGAaacguacaaGGCGGCGCugGu -3'
miRNA:   3'- -UUAC-UUGAa---CCGCUg--------CUGCCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 19063 0.66 0.933376
Target:  5'- aGGUGAACUcggacgGGCaGAUGcUGGCGUugGa -3'
miRNA:   3'- -UUACUUGAa-----CCG-CUGCuGCCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 23170 0.67 0.904514
Target:  5'- --cGGGCacGGCGGCuGCGG-GCACGg -3'
miRNA:   3'- uuaCUUGaaCCGCUGcUGCCgCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.