miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6886 3' -54.3 NC_001875.2 + 127969 0.7 0.774256
Target:  5'- ---cAGCUUGGCGGCG-CGGUGCugcCGu -3'
miRNA:   3'- uuacUUGAACCGCUGCuGCCGCGu--GC- -5'
6886 3' -54.3 NC_001875.2 + 69770 0.71 0.698315
Target:  5'- -uUGAAUUUGGCGACGGC-GCGUuuuugaguguguuucGCGa -3'
miRNA:   3'- uuACUUGAACCGCUGCUGcCGCG---------------UGC- -5'
6886 3' -54.3 NC_001875.2 + 67935 0.71 0.714728
Target:  5'- cAUGAugc-GGCGGCGccACGGCGCGCu -3'
miRNA:   3'- uUACUugaaCCGCUGC--UGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 108556 0.71 0.724892
Target:  5'- uGGUGGACauuuacGGCG-CGGCGGUGCugGc -3'
miRNA:   3'- -UUACUUGaa----CCGCuGCUGCCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 10454 0.7 0.734972
Target:  5'- ---uGACgcGGCG-CGGCGGCGCGCu -3'
miRNA:   3'- uuacUUGaaCCGCuGCUGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 68562 0.7 0.734972
Target:  5'- --------cGGCGGCGGCGGuCGCGCa -3'
miRNA:   3'- uuacuugaaCCGCUGCUGCC-GCGUGc -5'
6886 3' -54.3 NC_001875.2 + 84404 0.7 0.754842
Target:  5'- --gGAGCUUcGGCGGCGGC-GCGUAUa -3'
miRNA:   3'- uuaCUUGAA-CCGCUGCUGcCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 98890 0.7 0.754842
Target:  5'- --cGGGCgacaUGGCGA--GCGGCGCGCa -3'
miRNA:   3'- uuaCUUGa---ACCGCUgcUGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 109116 0.7 0.774256
Target:  5'- --aGggUauaGGCGGCGACGGCG-GCGg -3'
miRNA:   3'- uuaCuuGaa-CCGCUGCUGCCGCgUGC- -5'
6886 3' -54.3 NC_001875.2 + 39660 0.71 0.68383
Target:  5'- --cGAGUUUGG-GcCGGCGGCGCGCGg -3'
miRNA:   3'- uuaCUUGAACCgCuGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 31954 0.72 0.673428
Target:  5'- --cGAgGCUgccGGCGACGACgaacgcguguGGCGCGCGu -3'
miRNA:   3'- uuaCU-UGAa--CCGCUGCUG----------CCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 48504 0.72 0.642048
Target:  5'- uAAUGGACUauuuUGGCG-CGccgccCGGCGCGCGc -3'
miRNA:   3'- -UUACUUGA----ACCGCuGCu----GCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 103116 0.83 0.17389
Target:  5'- cGUGGcucGCUUGGCGGCGGCGGCGCcCu -3'
miRNA:   3'- uUACU---UGAACCGCUGCUGCCGCGuGc -5'
6886 3' -54.3 NC_001875.2 + 111779 0.81 0.241752
Target:  5'- -cUGGugUcgcUGGUGACGGCGGUGCACGc -3'
miRNA:   3'- uuACUugA---ACCGCUGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 91446 0.76 0.413283
Target:  5'- -cUGAGCggcGGCG-CGugGGCGCGCa -3'
miRNA:   3'- uuACUUGaa-CCGCuGCugCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 29796 0.76 0.422262
Target:  5'- --gGGACUgugcgGGCGcUGGCGGCGCAUGg -3'
miRNA:   3'- uuaCUUGAa----CCGCuGCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 70190 0.76 0.440568
Target:  5'- --cGAGCcgGGCGGCGACGGCGacCACu -3'
miRNA:   3'- uuaCUUGaaCCGCUGCUGCCGC--GUGc -5'
6886 3' -54.3 NC_001875.2 + 32002 0.75 0.459315
Target:  5'- uGUGAGC--GGCGGCGACGcaGCGCACu -3'
miRNA:   3'- uUACUUGaaCCGCUGCUGC--CGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 47 0.74 0.507936
Target:  5'- uGGUGcucAACUcGGCGGCGGCGGCGaACGa -3'
miRNA:   3'- -UUAC---UUGAaCCGCUGCUGCCGCgUGC- -5'
6886 3' -54.3 NC_001875.2 + 129542 0.73 0.589692
Target:  5'- --cGAGCUgcgcGCGGCcACGGCGCGCGc -3'
miRNA:   3'- uuaCUUGAac--CGCUGcUGCCGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.