miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6886 5' -56.9 NC_001875.2 + 129213 0.66 0.847743
Target:  5'- uCCGUGCUgUGCCACAucUGCuCUUGc -3'
miRNA:   3'- uGGUACGGgGCGGUGUuaACGcGAGC- -5'
6886 5' -56.9 NC_001875.2 + 34086 0.66 0.847743
Target:  5'- aGCCAcacGCCCgUGCCGgGGUUgcacgagcgcgcGCGCUCGc -3'
miRNA:   3'- -UGGUa--CGGG-GCGGUgUUAA------------CGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 114182 0.66 0.847743
Target:  5'- cGCCA-GCUucaCCGCCagcgcGCGAUUGCGCa-- -3'
miRNA:   3'- -UGGUaCGG---GGCGG-----UGUUAACGCGagc -5'
6886 5' -56.9 NC_001875.2 + 48821 0.66 0.847743
Target:  5'- -aCAUGCUCCGCgCGCuacgGCGC-CGc -3'
miRNA:   3'- ugGUACGGGGCG-GUGuuaaCGCGaGC- -5'
6886 5' -56.9 NC_001875.2 + 41818 0.66 0.847743
Target:  5'- cGCCG-GCgCCGCgGcCAGUUGCGCg-- -3'
miRNA:   3'- -UGGUaCGgGGCGgU-GUUAACGCGagc -5'
6886 5' -56.9 NC_001875.2 + 36820 0.66 0.847743
Target:  5'- ----cGCgCCGCgGCAGUUGCGCg-- -3'
miRNA:   3'- ugguaCGgGGCGgUGUUAACGCGagc -5'
6886 5' -56.9 NC_001875.2 + 106000 0.66 0.846936
Target:  5'- cGCCAUgGCCCCGaCUuCAucugggcGUUGCaguGCUCGg -3'
miRNA:   3'- -UGGUA-CGGGGC-GGuGU-------UAACG---CGAGC- -5'
6886 5' -56.9 NC_001875.2 + 98808 0.66 0.839583
Target:  5'- gGCgCG-GCgCCCGCCGCGc-UGCGCUUa -3'
miRNA:   3'- -UG-GUaCG-GGGCGGUGUuaACGCGAGc -5'
6886 5' -56.9 NC_001875.2 + 105614 0.66 0.839583
Target:  5'- cGCCAUGCCCCGgUACGcg-GCcCUgGu -3'
miRNA:   3'- -UGGUACGGGGCgGUGUuaaCGcGAgC- -5'
6886 5' -56.9 NC_001875.2 + 105772 0.66 0.839583
Target:  5'- ----cGCCCgCGCUGCAAUggacaGCGUUCGa -3'
miRNA:   3'- ugguaCGGG-GCGGUGUUAa----CGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 121445 0.66 0.83123
Target:  5'- --gGUGCCgCGCCACGGcgcggcgGCGUUCa -3'
miRNA:   3'- uggUACGGgGCGGUGUUaa-----CGCGAGc -5'
6886 5' -56.9 NC_001875.2 + 98390 0.66 0.83123
Target:  5'- gACCAcUGgCCgGCCGCGcugaacGCGCUCa -3'
miRNA:   3'- -UGGU-ACgGGgCGGUGUuaa---CGCGAGc -5'
6886 5' -56.9 NC_001875.2 + 42797 0.66 0.828688
Target:  5'- gACCA-GCCCgCGCaCgggcacgcugaaugACAAcUUGCGCUCGc -3'
miRNA:   3'- -UGGUaCGGG-GCG-G--------------UGUU-AACGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 125065 0.66 0.821829
Target:  5'- cGCUgAUGCCCugaaacaCGCCGCGAaUGCGCg-- -3'
miRNA:   3'- -UGG-UACGGG-------GCGGUGUUaACGCGagc -5'
6886 5' -56.9 NC_001875.2 + 16539 0.66 0.813977
Target:  5'- --aAUGCgCCGCCACGucgGCGCccUCGu -3'
miRNA:   3'- uggUACGgGGCGGUGUuaaCGCG--AGC- -5'
6886 5' -56.9 NC_001875.2 + 76114 0.66 0.805094
Target:  5'- cGCCGUagcGCUCCuuuuccagcGCCACGucaaUGCGCUCa -3'
miRNA:   3'- -UGGUA---CGGGG---------CGGUGUua--ACGCGAGc -5'
6886 5' -56.9 NC_001875.2 + 113666 0.66 0.805094
Target:  5'- cGCCG-GCaCCGCCACAGUggcgGCGUcgCGc -3'
miRNA:   3'- -UGGUaCGgGGCGGUGUUAa---CGCGa-GC- -5'
6886 5' -56.9 NC_001875.2 + 22012 0.67 0.786855
Target:  5'- cGCCGgcacUGCCCaauCCACAGacGCGUUCGa -3'
miRNA:   3'- -UGGU----ACGGGgc-GGUGUUaaCGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 61503 0.67 0.786855
Target:  5'- cGCCG-GCUCggCGCCGCAGUccgcGUGCUCGc -3'
miRNA:   3'- -UGGUaCGGG--GCGGUGUUAa---CGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 23095 0.67 0.777517
Target:  5'- cGCCGcgugcagcUGCCCCGCCAaaggccgcUGCGCa-- -3'
miRNA:   3'- -UGGU--------ACGGGGCGGUguua----ACGCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.