miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 3' -54.5 NC_001875.2 + 8433 1.07 0.004183
Target:  5'- uUCAACGCGACCCAUGAACACGGCCAAa -3'
miRNA:   3'- -AGUUGCGCUGGGUACUUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 7161 0.81 0.206248
Target:  5'- cCAGCGCGACCCAaacaUGAACACgucugagguGGCCAu -3'
miRNA:   3'- aGUUGCGCUGGGU----ACUUGUG---------CCGGUu -5'
6887 3' -54.5 NC_001875.2 + 11083 0.79 0.291715
Target:  5'- -uGGCGCGcGCCC-UGGACACGGCCGc -3'
miRNA:   3'- agUUGCGC-UGGGuACUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 108357 0.76 0.393761
Target:  5'- cCGACGUGGCCCA---ACACGGUCAAc -3'
miRNA:   3'- aGUUGCGCUGGGUacuUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 97602 0.76 0.420379
Target:  5'- gUAACGCGugCCGUGAGgGgcUGGCCAAu -3'
miRNA:   3'- aGUUGCGCugGGUACUUgU--GCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 125321 0.75 0.476713
Target:  5'- gCGACGagGACCgGUGGACGgCGGCCAGc -3'
miRNA:   3'- aGUUGCg-CUGGgUACUUGU-GCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 120027 0.74 0.486466
Target:  5'- cCGGCGCGACCaCAaacaccGACGCGGCCGg -3'
miRNA:   3'- aGUUGCGCUGG-GUac----UUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 9546 0.74 0.526368
Target:  5'- -gGACGCGGCUgGUGAGCGgauaugaggcCGGCCGAc -3'
miRNA:   3'- agUUGCGCUGGgUACUUGU----------GCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 124604 0.73 0.577841
Target:  5'- gCAGCGCGGaaagUgCAUGAAC-CGGCCAAu -3'
miRNA:   3'- aGUUGCGCU----GgGUACUUGuGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 56811 0.73 0.588286
Target:  5'- aCAGCGCGuACUCGUu--CACGGCCGAc -3'
miRNA:   3'- aGUUGCGC-UGGGUAcuuGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 37047 0.72 0.598765
Target:  5'- aCGGCGCGugCacgcgcgcGGACGCGGCCAc -3'
miRNA:   3'- aGUUGCGCugGgua-----CUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 118745 0.72 0.60927
Target:  5'- cCAGCuGCGGCaCAUGGugGCGGCCu- -3'
miRNA:   3'- aGUUG-CGCUGgGUACUugUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 55540 0.72 0.60927
Target:  5'- -gAAUGCGACgCgCAUGAACACGGgCAu -3'
miRNA:   3'- agUUGCGCUG-G-GUACUUGUGCCgGUu -5'
6887 3' -54.5 NC_001875.2 + 112713 0.72 0.630326
Target:  5'- cCAGCGCuuGGCCCAcGAGCGUGGCCu- -3'
miRNA:   3'- aGUUGCG--CUGGGUaCUUGUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 83795 0.72 0.630326
Target:  5'- gUAGCGCGcgcccucguGCCUGUGGGCGgCGGCCAc -3'
miRNA:   3'- aGUUGCGC---------UGGGUACUUGU-GCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 14827 0.71 0.661898
Target:  5'- gUCAGCGCG-CCCugguuuugauUGAACACGGUgGg -3'
miRNA:   3'- -AGUUGCGCuGGGu---------ACUUGUGCCGgUu -5'
6887 3' -54.5 NC_001875.2 + 50481 0.71 0.661898
Target:  5'- gCGACGCGGCCggcgCGUGcGCGCGGCa-- -3'
miRNA:   3'- aGUUGCGCUGG----GUACuUGUGCCGguu -5'
6887 3' -54.5 NC_001875.2 + 101611 0.71 0.693241
Target:  5'- gUCAACGCGACCacguacaaaGUGGucgccACaACGGCCGu -3'
miRNA:   3'- -AGUUGCGCUGGg--------UACU-----UG-UGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 90504 0.71 0.703594
Target:  5'- --cGCGCGGCCCAcuuGCACGGCg-- -3'
miRNA:   3'- aguUGCGCUGGGUacuUGUGCCGguu -5'
6887 3' -54.5 NC_001875.2 + 73022 0.7 0.713882
Target:  5'- gCAACGCGcgcauuuCCgCGUGcAGCugGGCCAAc -3'
miRNA:   3'- aGUUGCGCu------GG-GUAC-UUGugCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.