miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 3' -54.5 NC_001875.2 + 1503 0.68 0.837289
Target:  5'- gUCAGCGaCGACCCugccuuuUGggUGCGGgCGc -3'
miRNA:   3'- -AGUUGC-GCUGGGu------ACuuGUGCCgGUu -5'
6887 3' -54.5 NC_001875.2 + 3511 0.68 0.819983
Target:  5'- -gGACGCGACCCGauaaGGC-CGGCCu- -3'
miRNA:   3'- agUUGCGCUGGGUac--UUGuGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 5933 0.68 0.853805
Target:  5'- gUAGCGCcGCgCAggUGGGCGCGGCCu- -3'
miRNA:   3'- aGUUGCGcUGgGU--ACUUGUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 5995 0.66 0.922727
Target:  5'- cCAGCGCGugCCGa-AugGgGGCCAc -3'
miRNA:   3'- aGUUGCGCugGGUacUugUgCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 7161 0.81 0.206248
Target:  5'- cCAGCGCGACCCAaacaUGAACACgucugagguGGCCAu -3'
miRNA:   3'- aGUUGCGCUGGGU----ACUUGUG---------CCGGUu -5'
6887 3' -54.5 NC_001875.2 + 8433 1.07 0.004183
Target:  5'- uUCAACGCGACCCAUGAACACGGCCAAa -3'
miRNA:   3'- -AGUUGCGCUGGGUACUUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 9546 0.74 0.526368
Target:  5'- -gGACGCGGCUgGUGAGCGgauaugaggcCGGCCGAc -3'
miRNA:   3'- agUUGCGCUGGgUACUUGU----------GCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 9586 0.67 0.891263
Target:  5'- aUCGGCGuCGAucaCCCAUu--CGCGGCCGc -3'
miRNA:   3'- -AGUUGC-GCU---GGGUAcuuGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 11083 0.79 0.291715
Target:  5'- -uGGCGCGcGCCC-UGGACACGGCCGc -3'
miRNA:   3'- agUUGCGC-UGGGuACUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 14559 0.67 0.869471
Target:  5'- --cACGCGGCCauCGUGAagcGCAuCGGCCGc -3'
miRNA:   3'- aguUGCGCUGG--GUACU---UGU-GCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 14827 0.71 0.661898
Target:  5'- gUCAGCGCG-CCCugguuuugauUGAACACGGUgGg -3'
miRNA:   3'- -AGUUGCGCuGGGu---------ACUUGUGCCGgUu -5'
6887 3' -54.5 NC_001875.2 + 18046 0.66 0.91089
Target:  5'- gCAAUGCGACaugcgCGUGGcggACAacCGGCCAAg -3'
miRNA:   3'- aGUUGCGCUGg----GUACU---UGU--GCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 18076 0.66 0.898052
Target:  5'- -gGGCGCGACCuCAUuAACGgCGGCUg- -3'
miRNA:   3'- agUUGCGCUGG-GUAcUUGU-GCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 22583 0.66 0.922727
Target:  5'- -gGGCGCGGCgCGUuGGC-CGGCCGg -3'
miRNA:   3'- agUUGCGCUGgGUAcUUGuGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 23668 0.66 0.91089
Target:  5'- gUCAuCGCGGUCCGUGuGCACGaCCAGg -3'
miRNA:   3'- -AGUuGCGCUGGGUACuUGUGCcGGUU- -5'
6887 3' -54.5 NC_001875.2 + 29200 0.66 0.898052
Target:  5'- gCAACuuUGGCCaguUGAugGCGGCCAAg -3'
miRNA:   3'- aGUUGc-GCUGGgu-ACUugUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 29238 0.69 0.79269
Target:  5'- --cGCGCGGCuuCCGUGGcauacugcggguGCGCGGCCGc -3'
miRNA:   3'- aguUGCGCUG--GGUACU------------UGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 29429 0.69 0.783272
Target:  5'- gUCGcCGCGGCCCAaguaguaGAACccgcugGCGGCCAu -3'
miRNA:   3'- -AGUuGCGCUGGGUa------CUUG------UGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 31036 0.69 0.773711
Target:  5'- gCGGC-CGACCCG---GCGCGGCCGu -3'
miRNA:   3'- aGUUGcGCUGGGUacuUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 32446 0.68 0.84565
Target:  5'- --uGCGCGACCCGcuGGCGCcGCCGGu -3'
miRNA:   3'- aguUGCGCUGGGUacUUGUGcCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.