miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 3' -54.5 NC_001875.2 + 38566 0.68 0.837289
Target:  5'- gUCGGCGCGgcguGCCCAuccUGcucuACACgGGCCAGc -3'
miRNA:   3'- -AGUUGCGC----UGGGU---ACu---UGUG-CCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 73498 0.69 0.773711
Target:  5'- gCAugGCGACCUguacGUGAcGCACGaGUCGAa -3'
miRNA:   3'- aGUugCGCUGGG----UACU-UGUGC-CGGUU- -5'
6887 3' -54.5 NC_001875.2 + 81844 0.69 0.783272
Target:  5'- -gGGCGCGACCaucc-GCACGGUCAAc -3'
miRNA:   3'- agUUGCGCUGGguacuUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 37520 0.69 0.783272
Target:  5'- aCGACGCG-CCCugccUGGACGCGcCCAAc -3'
miRNA:   3'- aGUUGCGCuGGGu---ACUUGUGCcGGUU- -5'
6887 3' -54.5 NC_001875.2 + 39128 0.69 0.783272
Target:  5'- gCGGCGaCGACCCugaccggcGAugAUGGCCAu -3'
miRNA:   3'- aGUUGC-GCUGGGua------CUugUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 29429 0.69 0.783272
Target:  5'- gUCGcCGCGGCCCAaguaguaGAACccgcugGCGGCCAu -3'
miRNA:   3'- -AGUuGCGCUGGGUa------CUUG------UGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 29238 0.69 0.79269
Target:  5'- --cGCGCGGCuuCCGUGGcauacugcggguGCGCGGCCGc -3'
miRNA:   3'- aguUGCGCUG--GGUACU------------UGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 74645 0.68 0.811054
Target:  5'- gUCGGCaGCGugCCAUGGccgggGCugGGCgAGc -3'
miRNA:   3'- -AGUUG-CGCugGGUACU-----UGugCCGgUU- -5'
6887 3' -54.5 NC_001875.2 + 122791 0.68 0.828731
Target:  5'- cCGGCGCGGaaaCCG---GCGCGGCCGg -3'
miRNA:   3'- aGUUGCGCUg--GGUacuUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 40168 0.7 0.753209
Target:  5'- gCAACGCGauGCgCAUGGGCgugccguacgcguACGGCCAGc -3'
miRNA:   3'- aGUUGCGC--UGgGUACUUG-------------UGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 131461 0.7 0.734228
Target:  5'- uUCAACGCuGGCCgAgcacaaucGCGCGGCCAAc -3'
miRNA:   3'- -AGUUGCG-CUGGgUacu-----UGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 90504 0.71 0.703594
Target:  5'- --cGCGCGGCCCAcuuGCACGGCg-- -3'
miRNA:   3'- aguUGCGCUGGGUacuUGUGCCGguu -5'
6887 3' -54.5 NC_001875.2 + 11083 0.79 0.291715
Target:  5'- -uGGCGCGcGCCC-UGGACACGGCCGc -3'
miRNA:   3'- agUUGCGC-UGGGuACUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 97602 0.76 0.420379
Target:  5'- gUAACGCGugCCGUGAGgGgcUGGCCAAu -3'
miRNA:   3'- aGUUGCGCugGGUACUUgU--GCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 120027 0.74 0.486466
Target:  5'- cCGGCGCGACCaCAaacaccGACGCGGCCGg -3'
miRNA:   3'- aGUUGCGCUGG-GUac----UUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 37047 0.72 0.598765
Target:  5'- aCGGCGCGugCacgcgcgcGGACGCGGCCAc -3'
miRNA:   3'- aGUUGCGCugGgua-----CUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 118745 0.72 0.60927
Target:  5'- cCAGCuGCGGCaCAUGGugGCGGCCu- -3'
miRNA:   3'- aGUUG-CGCUGgGUACUugUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 55540 0.72 0.60927
Target:  5'- -gAAUGCGACgCgCAUGAACACGGgCAu -3'
miRNA:   3'- agUUGCGCUG-G-GUACUUGUGCCgGUu -5'
6887 3' -54.5 NC_001875.2 + 112713 0.72 0.630326
Target:  5'- cCAGCGCuuGGCCCAcGAGCGUGGCCu- -3'
miRNA:   3'- aGUUGCG--CUGGGUaCUUGUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 14827 0.71 0.661898
Target:  5'- gUCAGCGCG-CCCugguuuugauUGAACACGGUgGg -3'
miRNA:   3'- -AGUUGCGCuGGGu---------ACUUGUGCCGgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.