miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 5' -52.5 NC_001875.2 + 8467 1.15 0.002528
Target:  5'- uGCUUGGUCACGUCGCGCGGAAACACCa -3'
miRNA:   3'- -CGAACCAGUGCAGCGCGCCUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 5127 0.81 0.326241
Target:  5'- ---aGGUCACGUC-CGCGGAcguGCGCCg -3'
miRNA:   3'- cgaaCCAGUGCAGcGCGCCUu--UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 114892 0.76 0.603441
Target:  5'- cGCUgguUGGUCACGUgGCGCaac-GCGCCg -3'
miRNA:   3'- -CGA---ACCAGUGCAgCGCGccuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 79253 0.75 0.624287
Target:  5'- aGCUggUGGUgGCG-CGCGUGGAGACGa- -3'
miRNA:   3'- -CGA--ACCAgUGCaGCGCGCCUUUGUgg -5'
6887 5' -52.5 NC_001875.2 + 120952 0.75 0.655582
Target:  5'- uGCgccaaCACGUUGCGCGGcAGCGCCa -3'
miRNA:   3'- -CGaaccaGUGCAGCGCGCCuUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 103339 0.74 0.696991
Target:  5'- ---cGGUgugaCGCuGUCGgGCGGggGCACCu -3'
miRNA:   3'- cgaaCCA----GUG-CAGCgCGCCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 54342 0.73 0.727487
Target:  5'- ---cGGUCACGUCGU-UGGAcGCGCCc -3'
miRNA:   3'- cgaaCCAGUGCAGCGcGCCUuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 94785 0.73 0.737494
Target:  5'- aGCgUGGcCGCGUcCGCGCGcGugcAGCGCCg -3'
miRNA:   3'- -CGaACCaGUGCA-GCGCGC-Cu--UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 18442 0.73 0.747406
Target:  5'- gGCgcGGUcCGCGUgGCGCGcGAAucgcGCGCCg -3'
miRNA:   3'- -CGaaCCA-GUGCAgCGCGC-CUU----UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 100896 0.73 0.757212
Target:  5'- ---cGGUCcggGCGccgcagCGCGCGGAGACGCg -3'
miRNA:   3'- cgaaCCAG---UGCa-----GCGCGCCUUUGUGg -5'
6887 5' -52.5 NC_001875.2 + 81469 0.72 0.77647
Target:  5'- cGC-UGGUCcgcggucagugGCG-CGCGCGGcccGACGCCa -3'
miRNA:   3'- -CGaACCAG-----------UGCaGCGCGCCu--UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 19864 0.72 0.785903
Target:  5'- ---cGGcCGCGUCGCGgCGcGGGCGCCg -3'
miRNA:   3'- cgaaCCaGUGCAGCGC-GCcUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 55181 0.72 0.785903
Target:  5'- cGCaUGGUuugCGCGUCGaacaaacgcaGCGGAuACGCCu -3'
miRNA:   3'- -CGaACCA---GUGCAGCg---------CGCCUuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 69608 0.72 0.813301
Target:  5'- cGUUUGGUCaaaACGUgcuguuggCGCGCGaGGugGACGCCg -3'
miRNA:   3'- -CGAACCAG---UGCA--------GCGCGC-CU--UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 86327 0.71 0.822104
Target:  5'- aGCuUUGG-CGCGUUGgcugcCGUGGAGGCACUg -3'
miRNA:   3'- -CG-AACCaGUGCAGC-----GCGCCUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 113682 0.71 0.830727
Target:  5'- --gUGGcgGCGUCGCGCGcGccGCACCa -3'
miRNA:   3'- cgaACCagUGCAGCGCGC-CuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 80608 0.71 0.839161
Target:  5'- --aUGGUCgucACGgugggCGCGCGGAAcgcGCGCUc -3'
miRNA:   3'- cgaACCAG---UGCa----GCGCGCCUU---UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 57941 0.71 0.855437
Target:  5'- --aUGuGUCGCGaaacgcggUCGUGCGGGAcCGCCg -3'
miRNA:   3'- cgaAC-CAGUGC--------AGCGCGCCUUuGUGG- -5'
6887 5' -52.5 NC_001875.2 + 42732 0.71 0.855437
Target:  5'- ---cGGUCGuCG-CGCGCGGcGACGCg -3'
miRNA:   3'- cgaaCCAGU-GCaGCGCGCCuUUGUGg -5'
6887 5' -52.5 NC_001875.2 + 33815 0.71 0.855437
Target:  5'- ---cGGcgCACGgCGCGCGGGggaaaAACGCCu -3'
miRNA:   3'- cgaaCCa-GUGCaGCGCGCCU-----UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.