miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 5' -52.5 NC_001875.2 + 5127 0.81 0.326241
Target:  5'- ---aGGUCACGUC-CGCGGAcguGCGCCg -3'
miRNA:   3'- cgaaCCAGUGCAGcGCGCCUu--UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 7049 0.68 0.948179
Target:  5'- cGCUUgucGGcCugGUucCGCuGCGGcGACGCCa -3'
miRNA:   3'- -CGAA---CCaGugCA--GCG-CGCCuUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 8467 1.15 0.002528
Target:  5'- uGCUUGGUCACGUCGCGCGGAAACACCa -3'
miRNA:   3'- -CGAACCAGUGCAGCGCGCCUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 12958 0.68 0.928811
Target:  5'- ---cGGUCuCGUCGCGgCGGGcgugggcuccGCGCCg -3'
miRNA:   3'- cgaaCCAGuGCAGCGC-GCCUu---------UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 16881 0.66 0.980376
Target:  5'- --cUGGUUguauGCGUaCGCGCaGcgGCGCCg -3'
miRNA:   3'- cgaACCAG----UGCA-GCGCGcCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 18442 0.73 0.747406
Target:  5'- gGCgcGGUcCGCGUgGCGCGcGAAucgcGCGCCg -3'
miRNA:   3'- -CGaaCCA-GUGCAgCGCGC-CUU----UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 19864 0.72 0.785903
Target:  5'- ---cGGcCGCGUCGCGgCGcGGGCGCCg -3'
miRNA:   3'- cgaaCCaGUGCAGCGC-GCcUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 21171 0.67 0.970081
Target:  5'- cGCUUcuuuucGGcaaaaaUCGuCGUCGCGCGGcacggccAGCGCCa -3'
miRNA:   3'- -CGAA------CC------AGU-GCAGCGCGCCu------UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 21253 0.68 0.943706
Target:  5'- aGC-UGGUCcagGCGcgCGCGCGGcgcggcuacGAGCACg -3'
miRNA:   3'- -CGaACCAG---UGCa-GCGCGCC---------UUUGUGg -5'
6887 5' -52.5 NC_001875.2 + 21831 0.69 0.905479
Target:  5'- --cUGGUCgagcuGCG-CGCGCGucAACGCCa -3'
miRNA:   3'- cgaACCAG-----UGCaGCGCGCcuUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 21938 0.66 0.982475
Target:  5'- aGCggGGcguuaaacguUCGCGgCGCGgGGAugggcGGCGCCa -3'
miRNA:   3'- -CGaaCC----------AGUGCaGCGCgCCU-----UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 25941 0.66 0.972955
Target:  5'- --gUGGUgGCGcCGCGCccgccaucGGGuacuGCACCg -3'
miRNA:   3'- cgaACCAgUGCaGCGCG--------CCUu---UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 27157 0.69 0.92335
Target:  5'- aGCUUGGUCgccgcuGCGUaGCuGCGacuAAGCACCg -3'
miRNA:   3'- -CGAACCAG------UGCAgCG-CGCc--UUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 28380 0.67 0.966995
Target:  5'- ---aGGUCguACGUCGCGgCGuGcacGACGCCg -3'
miRNA:   3'- cgaaCCAG--UGCAGCGC-GC-Cu--UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 30038 0.68 0.948179
Target:  5'- gGCUUGGgCGgGcuguUUGCGUGGGagauuGACGCCg -3'
miRNA:   3'- -CGAACCaGUgC----AGCGCGCCU-----UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 31912 0.68 0.952411
Target:  5'- aCUUGGcCGCGcugcaccgCGCGCGGGccCGCUc -3'
miRNA:   3'- cGAACCaGUGCa-------GCGCGCCUuuGUGG- -5'
6887 5' -52.5 NC_001875.2 + 32485 0.68 0.938988
Target:  5'- aCUUGGcgggCGCGcccaagUUGCGCGGAcacGACGCUu -3'
miRNA:   3'- cGAACCa---GUGC------AGCGCGCCU---UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 33480 0.67 0.966995
Target:  5'- --gUGG-CGCGcCGCGCgcugGGguGCGCCa -3'
miRNA:   3'- cgaACCaGUGCaGCGCG----CCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 33549 0.69 0.899032
Target:  5'- cGCgUUGGcCACagugcgGUCGcCGCGG-GGCACCa -3'
miRNA:   3'- -CG-AACCaGUG------CAGC-GCGCCuUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 33815 0.71 0.855437
Target:  5'- ---cGGcgCACGgCGCGCGGGggaaaAACGCCu -3'
miRNA:   3'- cgaaCCa-GUGCaGCGCGCCU-----UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.