miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 5' -52.5 NC_001875.2 + 79110 0.68 0.934024
Target:  5'- aCUUGGcCACGgCGUugucgGCGGcGGGCGCCg -3'
miRNA:   3'- cGAACCaGUGCaGCG-----CGCC-UUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 50002 0.69 0.905479
Target:  5'- cGCUUG-UCGCGguuggggcgCGCGUGGu--CGCCg -3'
miRNA:   3'- -CGAACcAGUGCa--------GCGCGCCuuuGUGG- -5'
6887 5' -52.5 NC_001875.2 + 72560 0.69 0.905479
Target:  5'- cGCUgcgGG-CGCGg-GCGCGGgcGCugCg -3'
miRNA:   3'- -CGAa--CCaGUGCagCGCGCCuuUGugG- -5'
6887 5' -52.5 NC_001875.2 + 54728 0.69 0.911682
Target:  5'- gGCgUGGaCAgGUagcCGUGCGGgcGCACCg -3'
miRNA:   3'- -CGaACCaGUgCA---GCGCGCCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 36645 0.69 0.91764
Target:  5'- aGCUugaagaUGGcCGCGUCGUGCGcgcugagcucGggGCGCg -3'
miRNA:   3'- -CGA------ACCaGUGCAGCGCGC----------CuuUGUGg -5'
6887 5' -52.5 NC_001875.2 + 27157 0.69 0.92335
Target:  5'- aGCUUGGUCgccgcuGCGUaGCuGCGacuAAGCACCg -3'
miRNA:   3'- -CGAACCAG------UGCAgCG-CGCc--UUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 112967 0.69 0.92335
Target:  5'- cGUcgGGaaAC-UCGCGCGGAAACAUg -3'
miRNA:   3'- -CGaaCCagUGcAGCGCGCCUUUGUGg -5'
6887 5' -52.5 NC_001875.2 + 12958 0.68 0.928811
Target:  5'- ---cGGUCuCGUCGCGgCGGGcgugggcuccGCGCCg -3'
miRNA:   3'- cgaaCCAGuGCAGCGC-GCCUu---------UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 41015 0.68 0.928811
Target:  5'- cGCgUGGUCGugcucaGUCGCGacacguCGGuGAACACCa -3'
miRNA:   3'- -CGaACCAGUg-----CAGCGC------GCC-UUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 110273 0.69 0.899032
Target:  5'- gGC-UGGcCGCGgagCGCGCGGGcugccccguCGCCg -3'
miRNA:   3'- -CGaACCaGUGCa--GCGCGCCUuu-------GUGG- -5'
6887 5' -52.5 NC_001875.2 + 66036 0.7 0.892343
Target:  5'- cGCUUGGcgcCGCGcaggcacCGCGCGccGACGCCg -3'
miRNA:   3'- -CGAACCa--GUGCa------GCGCGCcuUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 45213 0.7 0.892343
Target:  5'- cGCUgGcGUaCACGUCGCGCGcGAAcaggcgGCGCg -3'
miRNA:   3'- -CGAaC-CA-GUGCAGCGCGC-CUU------UGUGg -5'
6887 5' -52.5 NC_001875.2 + 5127 0.81 0.326241
Target:  5'- ---aGGUCACGUC-CGCGGAcguGCGCCg -3'
miRNA:   3'- cgaaCCAGUGCAGcGCGCCUu--UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 100896 0.73 0.757212
Target:  5'- ---cGGUCcggGCGccgcagCGCGCGGAGACGCg -3'
miRNA:   3'- cgaaCCAG---UGCa-----GCGCGCCUUUGUGg -5'
6887 5' -52.5 NC_001875.2 + 55181 0.72 0.785903
Target:  5'- cGCaUGGUuugCGCGUCGaacaaacgcaGCGGAuACGCCu -3'
miRNA:   3'- -CGaACCA---GUGCAGCg---------CGCCUuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 69608 0.72 0.813301
Target:  5'- cGUUUGGUCaaaACGUgcuguuggCGCGCGaGGugGACGCCg -3'
miRNA:   3'- -CGAACCAG---UGCA--------GCGCGC-CU--UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 86327 0.71 0.822104
Target:  5'- aGCuUUGG-CGCGUUGgcugcCGUGGAGGCACUg -3'
miRNA:   3'- -CG-AACCaGUGCAGC-----GCGCCUUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 80608 0.71 0.839161
Target:  5'- --aUGGUCgucACGgugggCGCGCGGAAcgcGCGCUc -3'
miRNA:   3'- cgaACCAG---UGCa----GCGCGCCUU---UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 42732 0.71 0.855437
Target:  5'- ---cGGUCGuCG-CGCGCGGcGACGCg -3'
miRNA:   3'- cgaaCCAGU-GCaGCGCGCCuUUGUGg -5'
6887 5' -52.5 NC_001875.2 + 85247 0.7 0.885418
Target:  5'- aGCgcgGGUucCGCGcUCgGCGCGGAcacgAGCGCCc -3'
miRNA:   3'- -CGaa-CCA--GUGC-AG-CGCGCCU----UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.