miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 5' -56.2 NC_001875.2 + 20681 1.04 0.003561
Target:  5'- aAUCGCUAAGCAGCGCCGUGACACCAAg -3'
miRNA:   3'- -UAGCGAUUCGUCGCGGCACUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 99025 0.76 0.300945
Target:  5'- cUCGC-AAGCGGCGCCGUu-CGCCGAg -3'
miRNA:   3'- uAGCGaUUCGUCGCGGCAcuGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 103444 0.72 0.471098
Target:  5'- uUUGCUGgucuGCGGCGUCGUGcACGCCGc -3'
miRNA:   3'- uAGCGAUu---CGUCGCGGCAC-UGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 94802 0.72 0.480852
Target:  5'- -gCGCgu-GCAGCGCCGUGcACgGCCAu -3'
miRNA:   3'- uaGCGauuCGUCGCGGCAC-UG-UGGUu -5'
6900 5' -56.2 NC_001875.2 + 23807 0.72 0.490703
Target:  5'- uGUCGCUccGCGGCGUCGggcGCGCCGu -3'
miRNA:   3'- -UAGCGAuuCGUCGCGGCac-UGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 20710 0.71 0.530984
Target:  5'- cGUgGgaAGGUGGCGCCGUGACGCa-- -3'
miRNA:   3'- -UAgCgaUUCGUCGCGGCACUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 80903 0.7 0.561964
Target:  5'- aGUCGCgcGAGCGGCGCC-UGAaaaACCAc -3'
miRNA:   3'- -UAGCGa-UUCGUCGCGGcACUg--UGGUu -5'
6900 5' -56.2 NC_001875.2 + 63896 0.69 0.625133
Target:  5'- --aGUaagAAGC-GCGCCGUGGCGCCGc -3'
miRNA:   3'- uagCGa--UUCGuCGCGGCACUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 41520 0.69 0.656903
Target:  5'- cAUCGuUUGGGCGGCGuuGUcGugACCGAc -3'
miRNA:   3'- -UAGC-GAUUCGUCGCggCA-CugUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 117940 0.69 0.677992
Target:  5'- cUCGC--AGUAGaCGCCGUGAC-CCGu -3'
miRNA:   3'- uAGCGauUCGUC-GCGGCACUGuGGUu -5'
6900 5' -56.2 NC_001875.2 + 77388 0.68 0.688481
Target:  5'- -aCGCUGuGCGGCGCCGcGGCuaacgaccGCCAc -3'
miRNA:   3'- uaGCGAUuCGUCGCGGCaCUG--------UGGUu -5'
6900 5' -56.2 NC_001875.2 + 16853 0.68 0.698919
Target:  5'- uUCGCUAcGCgGGCGCaCGUGuACGCCc- -3'
miRNA:   3'- uAGCGAUuCG-UCGCG-GCAC-UGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 78308 0.68 0.709298
Target:  5'- cUCGCgcuGGUAGCGCacgaCGUG-CGCCAAa -3'
miRNA:   3'- uAGCGau-UCGUCGCG----GCACuGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 83000 0.68 0.709298
Target:  5'- cGUCGCcggcgggcuugAAGCGGCGCCGUaGCGCgCGGa -3'
miRNA:   3'- -UAGCGa----------UUCGUCGCGGCAcUGUG-GUU- -5'
6900 5' -56.2 NC_001875.2 + 122690 0.68 0.709298
Target:  5'- --aGUU-GGCGuGCGCCGUGgACACCGAa -3'
miRNA:   3'- uagCGAuUCGU-CGCGGCAC-UGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 121165 0.67 0.739971
Target:  5'- cGUUGC--GGCAGCGCC-UG-CGCCAAg -3'
miRNA:   3'- -UAGCGauUCGUCGCGGcACuGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 88135 0.67 0.739971
Target:  5'- -gUGCUGAGCGGCGCCaaaauuGUGugGgCGc -3'
miRNA:   3'- uaGCGAUUCGUCGCGG------CACugUgGUu -5'
6900 5' -56.2 NC_001875.2 + 122022 0.67 0.748009
Target:  5'- cUCGCccguuuuuuauAGCAGcCGCCGaUGGCGCCGu -3'
miRNA:   3'- uAGCGau---------UCGUC-GCGGC-ACUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 100245 0.67 0.750008
Target:  5'- -cCGCccacGGCacGGCGCCG-GACACCAc -3'
miRNA:   3'- uaGCGau--UCG--UCGCGGCaCUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 45749 0.67 0.750008
Target:  5'- -cCGUaAAcGCGGCGCCGagcccGACACCGAg -3'
miRNA:   3'- uaGCGaUU-CGUCGCGGCa----CUGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.