miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 5' -56.2 NC_001875.2 + 20681 1.04 0.003561
Target:  5'- aAUCGCUAAGCAGCGCCGUGACACCAAg -3'
miRNA:   3'- -UAGCGAUUCGUCGCGGCACUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 48254 0.66 0.798322
Target:  5'- --aGCUAcGGCGGCGCCccgccggGACACCu- -3'
miRNA:   3'- uagCGAU-UCGUCGCGGca-----CUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 67121 0.66 0.816589
Target:  5'- cGUCGCccgccuuGGcCAGCGCCGUGuuGCugCGg -3'
miRNA:   3'- -UAGCGau-----UC-GUCGCGGCAC--UGugGUu -5'
6900 5' -56.2 NC_001875.2 + 95731 0.66 0.825458
Target:  5'- -gUGCaUGAGCGGCGCCGc--CGCCGc -3'
miRNA:   3'- uaGCG-AUUCGUCGCGGCacuGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 104701 0.66 0.825458
Target:  5'- uGUCGCUAAgGCuGGUGgUGUGGcCGCCAAa -3'
miRNA:   3'- -UAGCGAUU-CG-UCGCgGCACU-GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 32814 0.66 0.834138
Target:  5'- --aGCUcGGCgaacGGCGCCGcuugcgagcgUGGCACCAAa -3'
miRNA:   3'- uagCGAuUCG----UCGCGGC----------ACUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 23638 0.66 0.834138
Target:  5'- cUUGCUGAGCGGgugcuCGCCGaGGC-CCAGg -3'
miRNA:   3'- uAGCGAUUCGUC-----GCGGCaCUGuGGUU- -5'
6900 5' -56.2 NC_001875.2 + 65721 0.66 0.834138
Target:  5'- -cCGC-GGGCGGCGCCGccuCGCCGc -3'
miRNA:   3'- uaGCGaUUCGUCGCGGCacuGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 5926 0.66 0.842622
Target:  5'- -gCGUUGGGUAGCGCCGcgcaggugGGCGCg-- -3'
miRNA:   3'- uaGCGAUUCGUCGCGGCa-------CUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 50006 0.67 0.788942
Target:  5'- uGUCGCgguuGgGGCGCgCGUGGuCGCCGGg -3'
miRNA:   3'- -UAGCGauu-CgUCGCG-GCACU-GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 113172 0.67 0.788942
Target:  5'- uUCGCccAGCAGCcgcaCCGUGACGCg-- -3'
miRNA:   3'- uAGCGauUCGUCGc---GGCACUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 103444 0.72 0.471098
Target:  5'- uUUGCUGgucuGCGGCGUCGUGcACGCCGc -3'
miRNA:   3'- uAGCGAUu---CGUCGCGGCAC-UGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 23807 0.72 0.490703
Target:  5'- uGUCGCUccGCGGCGUCGggcGCGCCGu -3'
miRNA:   3'- -UAGCGAuuCGUCGCGGCac-UGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 122690 0.68 0.709298
Target:  5'- --aGUU-GGCGuGCGCCGUGgACACCGAa -3'
miRNA:   3'- uagCGAuUCGU-CGCGGCAC-UGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 78308 0.68 0.709298
Target:  5'- cUCGCgcuGGUAGCGCacgaCGUG-CGCCAAa -3'
miRNA:   3'- uAGCGau-UCGUCGCG----GCACuGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 45749 0.67 0.750008
Target:  5'- -cCGUaAAcGCGGCGCCGagcccGACACCGAg -3'
miRNA:   3'- uaGCGaUU-CGUCGCGGCa----CUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 68572 0.67 0.759933
Target:  5'- gGUCGCgcaccgcGUGGCGCCGcUGGcCGCCGAg -3'
miRNA:   3'- -UAGCGauu----CGUCGCGGC-ACU-GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 72937 0.67 0.788942
Target:  5'- uUCGCUGucgaucuGCAGCGUuuCG-GGCGCCAc -3'
miRNA:   3'- uAGCGAUu------CGUCGCG--GCaCUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 91444 0.67 0.788942
Target:  5'- --aGCUGAGCGGCGgCgCGUGGgcgcgcaugucCACCGAu -3'
miRNA:   3'- uagCGAUUCGUCGC-G-GCACU-----------GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 124871 0.66 0.842622
Target:  5'- -cCGCUGuucaAGCAgcGCGCCGUGGCGa--- -3'
miRNA:   3'- uaGCGAU----UCGU--CGCGGCACUGUgguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.