miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 5' -56.2 NC_001875.2 + 2654 0.66 0.825458
Target:  5'- -aCGuCUAcuuGCGGCGCCGgcGGCGCCu- -3'
miRNA:   3'- uaGC-GAUu--CGUCGCGGCa-CUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 5926 0.66 0.842622
Target:  5'- -gCGUUGGGUAGCGCCGcgcaggugGGCGCg-- -3'
miRNA:   3'- uaGCGAUUCGUCGCGGCa-------CUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 6813 0.66 0.806626
Target:  5'- gGUCGCUGaaccAGCuGCGCCGcgUcgacaacgugcccGACGCCAAc -3'
miRNA:   3'- -UAGCGAU----UCGuCGCGGC--A-------------CUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 11030 0.66 0.825458
Target:  5'- cGUCGUUGcuGCuGCGCCGUuugcgcuuguugGAUACCAGc -3'
miRNA:   3'- -UAGCGAUu-CGuCGCGGCA------------CUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 16853 0.68 0.698919
Target:  5'- uUCGCUAcGCgGGCGCaCGUGuACGCCc- -3'
miRNA:   3'- uAGCGAUuCG-UCGCG-GCAC-UGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 16895 0.66 0.816589
Target:  5'- -aCGCgcAGCGGCGCCGcgaUGuCGCUGAu -3'
miRNA:   3'- uaGCGauUCGUCGCGGC---ACuGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 18119 0.66 0.834138
Target:  5'- aGUCGCUcaucGGCuuuGUGCUGggcGACACCAu -3'
miRNA:   3'- -UAGCGAu---UCGu--CGCGGCa--CUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 20681 1.04 0.003561
Target:  5'- aAUCGCUAAGCAGCGCCGUGACACCAAg -3'
miRNA:   3'- -UAGCGAUUCGUCGCGGCACUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 20710 0.71 0.530984
Target:  5'- cGUgGgaAGGUGGCGCCGUGACGCa-- -3'
miRNA:   3'- -UAgCgaUUCGUCGCGGCACUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 21342 0.66 0.825458
Target:  5'- cUUGUUgacGAGCAGCGCCGUgugcuuGACGCgGu -3'
miRNA:   3'- uAGCGA---UUCGUCGCGGCA------CUGUGgUu -5'
6900 5' -56.2 NC_001875.2 + 23638 0.66 0.834138
Target:  5'- cUUGCUGAGCGGgugcuCGCCGaGGC-CCAGg -3'
miRNA:   3'- uAGCGAUUCGUC-----GCGGCaCUGuGGUU- -5'
6900 5' -56.2 NC_001875.2 + 23807 0.72 0.490703
Target:  5'- uGUCGCUccGCGGCGUCGggcGCGCCGu -3'
miRNA:   3'- -UAGCGAuuCGUCGCGGCac-UGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 32814 0.66 0.834138
Target:  5'- --aGCUcGGCgaacGGCGCCGcuugcgagcgUGGCACCAAa -3'
miRNA:   3'- uagCGAuUCG----UCGCGGC----------ACUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 32874 0.66 0.816589
Target:  5'- -aCGCggaAAGCGGCGCCGguuccucuuAUACCGAg -3'
miRNA:   3'- uaGCGa--UUCGUCGCGGCac-------UGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 41520 0.69 0.656903
Target:  5'- cAUCGuUUGGGCGGCGuuGUcGugACCGAc -3'
miRNA:   3'- -UAGC-GAUUCGUCGCggCA-CugUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 45749 0.67 0.750008
Target:  5'- -cCGUaAAcGCGGCGCCGagcccGACACCGAg -3'
miRNA:   3'- uaGCGaUU-CGUCGCGGCa----CUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 48254 0.66 0.798322
Target:  5'- --aGCUAcGGCGGCGCCccgccggGACACCu- -3'
miRNA:   3'- uagCGAU-UCGUCGCGGca-----CUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 50006 0.67 0.788942
Target:  5'- uGUCGCgguuGgGGCGCgCGUGGuCGCCGGg -3'
miRNA:   3'- -UAGCGauu-CgUCGCG-GCACU-GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 50208 0.66 0.825458
Target:  5'- aAUCGCgcAGCAGCGCC-UGA-ACCc- -3'
miRNA:   3'- -UAGCGauUCGUCGCGGcACUgUGGuu -5'
6900 5' -56.2 NC_001875.2 + 58871 0.67 0.769738
Target:  5'- uUUGCgcaaccuaucAGGC-GCGCCGUGGCGCCc- -3'
miRNA:   3'- uAGCGa---------UUCGuCGCGGCACUGUGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.