miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 3' -65.3 NC_001875.2 + 65810 0.74 0.119972
Target:  5'- uGCCUGCGCgGCGccaagcgcuUGCAGCUGCUCUa -3'
miRNA:   3'- uUGGGCGCGgCGC---------ACGUCGACGGGGc -5'
6902 3' -65.3 NC_001875.2 + 89151 0.68 0.317897
Target:  5'- aAACCgCGCGCCGCGcgguuucgUGCAcGCUggcgcaaaucaGCCUCGa -3'
miRNA:   3'- -UUGG-GCGCGGCGC--------ACGU-CGA-----------CGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 99922 0.68 0.324934
Target:  5'- cGGgCCGCGCgCGCgGUGCAGCgcgGCCaaGu -3'
miRNA:   3'- -UUgGGCGCG-GCG-CACGUCGa--CGGggC- -5'
6902 3' -65.3 NC_001875.2 + 77251 0.66 0.452712
Target:  5'- --aCCGCGCCGUGgGC-GC-GCCgCCGg -3'
miRNA:   3'- uugGGCGCGGCGCaCGuCGaCGG-GGC- -5'
6902 3' -65.3 NC_001875.2 + 98630 0.73 0.161515
Target:  5'- gAGCCCGCGcCCGCGUuugccgGCAGCgagGCgCUGg -3'
miRNA:   3'- -UUGGGCGC-GGCGCA------CGUCGa--CGgGGC- -5'
6902 3' -65.3 NC_001875.2 + 102761 0.71 0.210541
Target:  5'- gAACCCgacgacGCGCCGUG-GCAGCaacacGCCCCu -3'
miRNA:   3'- -UUGGG------CGCGGCGCaCGUCGa----CGGGGc -5'
6902 3' -65.3 NC_001875.2 + 32450 0.7 0.253831
Target:  5'- cGACCCgcugGCGCCGCcgGUGCGGC-GCUuuGg -3'
miRNA:   3'- -UUGGG----CGCGGCG--CACGUCGaCGGggC- -5'
6902 3' -65.3 NC_001875.2 + 63294 0.7 0.253831
Target:  5'- --gCCGcCGCCGCGgcgGCAaaccGCUGCUCCa -3'
miRNA:   3'- uugGGC-GCGGCGCa--CGU----CGACGGGGc -5'
6902 3' -65.3 NC_001875.2 + 121176 0.69 0.278094
Target:  5'- cGCCUGCGCCaaGUGCAGUccGCCgCCc -3'
miRNA:   3'- uUGGGCGCGGcgCACGUCGa-CGG-GGc -5'
6902 3' -65.3 NC_001875.2 + 73023 0.68 0.317897
Target:  5'- cAACgCGCGCauuucCGCGUGCAGCUGggccaaCUCGg -3'
miRNA:   3'- -UUGgGCGCG-----GCGCACGUCGACg-----GGGC- -5'
6902 3' -65.3 NC_001875.2 + 88533 0.69 0.290904
Target:  5'- cGACCCGCG-CGCGcGCcGCUaCCCCa -3'
miRNA:   3'- -UUGGGCGCgGCGCaCGuCGAcGGGGc -5'
6902 3' -65.3 NC_001875.2 + 19859 0.69 0.265738
Target:  5'- aGACUCG-GCCGCGUcGCGGCgcggGCgCCGu -3'
miRNA:   3'- -UUGGGCgCGGCGCA-CGUCGa---CGgGGC- -5'
6902 3' -65.3 NC_001875.2 + 66106 0.74 0.129317
Target:  5'- aGGCCCGCGCgGCGggcggcgagGCGGCgccGCCCgCGg -3'
miRNA:   3'- -UUGGGCGCGgCGCa--------CGUCGa--CGGG-GC- -5'
6902 3' -65.3 NC_001875.2 + 14512 0.69 0.29748
Target:  5'- cGCCCGCGCCGCGccgUGUcaAGCcGCUCa- -3'
miRNA:   3'- uUGGGCGCGGCGC---ACG--UCGaCGGGgc -5'
6902 3' -65.3 NC_001875.2 + 121398 0.73 0.153787
Target:  5'- --gCCGCGCCGCGUcaaaGCuGCUGCgCCa -3'
miRNA:   3'- uugGGCGCGGCGCA----CGuCGACGgGGc -5'
6902 3' -65.3 NC_001875.2 + 79879 0.69 0.259729
Target:  5'- -uCCaCGCGCgCGCGUGCGGCacgucGCgCCCa -3'
miRNA:   3'- uuGG-GCGCG-GCGCACGUCGa----CG-GGGc -5'
6902 3' -65.3 NC_001875.2 + 94796 0.68 0.30417
Target:  5'- -gUCCGCG-CGCGUGCAGC-GCCgUGc -3'
miRNA:   3'- uuGGGCGCgGCGCACGUCGaCGGgGC- -5'
6902 3' -65.3 NC_001875.2 + 129103 0.68 0.324225
Target:  5'- cAGCCUG-GCCaaaaaagGCG-GCGGCUGCCCUa -3'
miRNA:   3'- -UUGGGCgCGG-------CGCaCGUCGACGGGGc -5'
6902 3' -65.3 NC_001875.2 + 59283 0.73 0.157609
Target:  5'- cGCCCGCGcCCGCGcccGCAGC-GCCCg- -3'
miRNA:   3'- uUGGGCGC-GGCGCa--CGUCGaCGGGgc -5'
6902 3' -65.3 NC_001875.2 + 17987 0.7 0.248043
Target:  5'- uGCCCGCGUUcaaCGUGCGGCccGaCCCCGa -3'
miRNA:   3'- uUGGGCGCGGc--GCACGUCGa-C-GGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.