Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6902 | 5' | -50.5 | NC_001875.2 | + | 23122 | 1.1 | 0.007888 |
Target: 5'- cCGCUGCGCAUGAUGAACGUGUACACGu -3' miRNA: 3'- -GCGACGCGUACUACUUGCACAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 108697 | 0.97 | 0.051148 |
Target: 5'- aGCgguaUGCGCAUGAUGAACGUGUACACGu -3' miRNA: 3'- gCG----ACGCGUACUACUUGCACAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 97394 | 0.78 | 0.554887 |
Target: 5'- uGCUGCGCGcgcauggcguUGAUGGGCGUGaauuUGCGCa -3' miRNA: 3'- gCGACGCGU----------ACUACUUGCAC----AUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 5445 | 0.77 | 0.607886 |
Target: 5'- ---cGUGCAaGAUGGACGUGUGCGCa -3' miRNA: 3'- gcgaCGCGUaCUACUUGCACAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 42746 | 0.74 | 0.774933 |
Target: 5'- gGCgacGCGCAUGGUGAGCG-GcGCGCu -3' miRNA: 3'- gCGa--CGCGUACUACUUGCaCaUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 24782 | 0.73 | 0.803562 |
Target: 5'- gCGCUGUGCAUGAcagGuGCGUGaUugACGc -3' miRNA: 3'- -GCGACGCGUACUa--CuUGCAC-AugUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 54107 | 0.73 | 0.812779 |
Target: 5'- uGCUGCGCcgccGAauUGcGCGUGUACACu -3' miRNA: 3'- gCGACGCGua--CU--ACuUGCACAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 101408 | 0.72 | 0.84776 |
Target: 5'- aGCUGCGCGU--UGGACGcuuUGcUGCACGa -3' miRNA: 3'- gCGACGCGUAcuACUUGC---AC-AUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 110812 | 0.72 | 0.864 |
Target: 5'- aCGCcGCGCA-GGUGGACGcgcugGUGCGCc -3' miRNA: 3'- -GCGaCGCGUaCUACUUGCa----CAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 59582 | 0.72 | 0.871781 |
Target: 5'- gCGCUGCaGCGUGGccGACGUGcgcgaGCACGg -3' miRNA: 3'- -GCGACG-CGUACUacUUGCACa----UGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 116770 | 0.71 | 0.892995 |
Target: 5'- gCGCUGCGCGUGcaAUGAGuugaugcCGggGUACACc -3' miRNA: 3'- -GCGACGCGUAC--UACUU-------GCa-CAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 46381 | 0.71 | 0.900498 |
Target: 5'- uGCUGCGCAUGugcagcgacacgGUGuccGACGUGgauguggACACGu -3' miRNA: 3'- gCGACGCGUAC------------UAC---UUGCACa------UGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 92604 | 0.71 | 0.900498 |
Target: 5'- cCGCUGUGCAgagUGGUGGGCGcgagcggcuUGcGCGCGu -3' miRNA: 3'- -GCGACGCGU---ACUACUUGC---------ACaUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 108942 | 0.7 | 0.925163 |
Target: 5'- gCGUUGCGCAgcagGAUGcggcCGUGUGCgauaGCGa -3' miRNA: 3'- -GCGACGCGUa---CUACuu--GCACAUG----UGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 44623 | 0.7 | 0.940925 |
Target: 5'- gGCUGUGUAUGAuugUGuucACcUGUGCGCGg -3' miRNA: 3'- gCGACGCGUACU---ACu--UGcACAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 102845 | 0.69 | 0.945659 |
Target: 5'- uGCaGCGgGUGAUGAcugagGCGUGUgugguucgcgACGCGg -3' miRNA: 3'- gCGaCGCgUACUACU-----UGCACA----------UGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 86338 | 0.69 | 0.950137 |
Target: 5'- uGCUGCacaaguGUGUGGUGGugGUGUuugGCACc -3' miRNA: 3'- gCGACG------CGUACUACUugCACA---UGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 105157 | 0.69 | 0.954362 |
Target: 5'- aCGCgcgGCGCGUGuUGGGCGaagucaucaUGUGCAUc -3' miRNA: 3'- -GCGa--CGCGUACuACUUGC---------ACAUGUGc -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 5936 | 0.69 | 0.96207 |
Target: 5'- gCGCcGCGCA-GGUGGGCGcggccucgcaGUACACGu -3' miRNA: 3'- -GCGaCGCGUaCUACUUGCa---------CAUGUGC- -5' |
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6902 | 5' | -50.5 | NC_001875.2 | + | 40171 | 0.69 | 0.96207 |
Target: 5'- aCGCgaUGCGCAUGG---GCGUgccGUACGCGu -3' miRNA: 3'- -GCG--ACGCGUACUacuUGCA---CAUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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