miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 5' -50.5 NC_001875.2 + 2267 0.68 0.977279
Target:  5'- uCGCUGCGggcCAUGuUGAcguCGUGaUGCGCGc -3'
miRNA:   3'- -GCGACGC---GUACuACUu--GCAC-AUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 5445 0.77 0.607886
Target:  5'- ---cGUGCAaGAUGGACGUGUGCGCa -3'
miRNA:   3'- gcgaCGCGUaCUACUUGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 5936 0.69 0.96207
Target:  5'- gCGCcGCGCA-GGUGGGCGcggccucgcaGUACACGu -3'
miRNA:   3'- -GCGaCGCGUaCUACUUGCa---------CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 21903 0.69 0.96207
Target:  5'- gCGCUGCucCGcGGUGAGCGgcgcGUGCAUGg -3'
miRNA:   3'- -GCGACGc-GUaCUACUUGCa---CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 23122 1.1 0.007888
Target:  5'- cCGCUGCGCAUGAUGAACGUGUACACGu -3'
miRNA:   3'- -GCGACGCGUACUACUUGCACAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 24782 0.73 0.803562
Target:  5'- gCGCUGUGCAUGAcagGuGCGUGaUugACGc -3'
miRNA:   3'- -GCGACGCGUACUa--CuUGCAC-AugUGC- -5'
6902 5' -50.5 NC_001875.2 + 26707 0.68 0.968824
Target:  5'- uGCUGCGCAUGAaccuUGAgu-UGaUGCACGc -3'
miRNA:   3'- gCGACGCGUACU----ACUugcAC-AUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 36327 0.68 0.965563
Target:  5'- gCGCUGgGgcUGuUGcGCGUGUACGCGg -3'
miRNA:   3'- -GCGACgCguACuACuUGCACAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 40171 0.69 0.96207
Target:  5'- aCGCgaUGCGCAUGG---GCGUgccGUACGCGu -3'
miRNA:   3'- -GCG--ACGCGUACUacuUGCA---CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 42746 0.74 0.774933
Target:  5'- gGCgacGCGCAUGGUGAGCG-GcGCGCu -3'
miRNA:   3'- gCGa--CGCGUACUACUUGCaCaUGUGc -5'
6902 5' -50.5 NC_001875.2 + 43762 0.66 0.990338
Target:  5'- uGCUGCGCGggcguuUGcgcaGACGUaacGUACGCGg -3'
miRNA:   3'- gCGACGCGUacu---AC----UUGCA---CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 43855 0.66 0.990338
Target:  5'- uGCUGCGC-----GGGCGUcgcGUACGCGg -3'
miRNA:   3'- gCGACGCGuacuaCUUGCA---CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 44623 0.7 0.940925
Target:  5'- gGCUGUGUAUGAuugUGuucACcUGUGCGCGg -3'
miRNA:   3'- gCGACGCGUACU---ACu--UGcACAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 46381 0.71 0.900498
Target:  5'- uGCUGCGCAUGugcagcgacacgGUGuccGACGUGgauguggACACGu -3'
miRNA:   3'- gCGACGCGUAC------------UAC---UUGCACa------UGUGC- -5'
6902 5' -50.5 NC_001875.2 + 53513 0.67 0.979682
Target:  5'- uCGgUGCGCGUGuuuuUGGcgcACGUcGUGCGCu -3'
miRNA:   3'- -GCgACGCGUACu---ACU---UGCA-CAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 54107 0.73 0.812779
Target:  5'- uGCUGCGCcgccGAauUGcGCGUGUACACu -3'
miRNA:   3'- gCGACGCGua--CU--ACuUGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 59582 0.72 0.871781
Target:  5'- gCGCUGCaGCGUGGccGACGUGcgcgaGCACGg -3'
miRNA:   3'- -GCGACG-CGUACUacUUGCACa----UGUGC- -5'
6902 5' -50.5 NC_001875.2 + 62548 0.67 0.978982
Target:  5'- cCGCUGaCGUAUucgaacgugucgucGGUGuGCGUGUGCAUu -3'
miRNA:   3'- -GCGAC-GCGUA--------------CUACuUGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 63706 0.66 0.993093
Target:  5'- aGgUGCGCGUGAuugccucgccggaacUGGACGcGcUGCACa -3'
miRNA:   3'- gCgACGCGUACU---------------ACUUGCaC-AUGUGc -5'
6902 5' -50.5 NC_001875.2 + 73363 0.66 0.991575
Target:  5'- aUGCcGCGCuAUGGUGcGCuUGUACugGu -3'
miRNA:   3'- -GCGaCGCG-UACUACuUGcACAUGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.