miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 5' -50.5 NC_001875.2 + 23122 1.1 0.007888
Target:  5'- cCGCUGCGCAUGAUGAACGUGUACACGu -3'
miRNA:   3'- -GCGACGCGUACUACUUGCACAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 73363 0.66 0.991575
Target:  5'- aUGCcGCGCuAUGGUGcGCuUGUACugGu -3'
miRNA:   3'- -GCGaCGCG-UACUACuUGcACAUGugC- -5'
6902 5' -50.5 NC_001875.2 + 125107 0.66 0.988963
Target:  5'- uGCUGCGCGUGAUGcgguuuAUGUcgccCGCGc -3'
miRNA:   3'- gCGACGCGUACUACu-----UGCAcau-GUGC- -5'
6902 5' -50.5 NC_001875.2 + 80272 0.67 0.98744
Target:  5'- aCGCcGCGCGUcGUGAACGgcucGCACu -3'
miRNA:   3'- -GCGaCGCGUAcUACUUGCaca-UGUGc -5'
6902 5' -50.5 NC_001875.2 + 119767 0.67 0.98189
Target:  5'- cCGgUGCGUcUGAcgGGcgACGUGUACGCu -3'
miRNA:   3'- -GCgACGCGuACUa-CU--UGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 119667 0.68 0.970064
Target:  5'- aGCUGCGCAUucucagcauccugucGGUGAACcggcUGUuugGCGCGa -3'
miRNA:   3'- gCGACGCGUA---------------CUACUUGc---ACA---UGUGC- -5'
6902 5' -50.5 NC_001875.2 + 110083 0.68 0.968824
Target:  5'- aCGCUGCGCGUGGaGGcCGccacGCGCGg -3'
miRNA:   3'- -GCGACGCGUACUaCUuGCaca-UGUGC- -5'
6902 5' -50.5 NC_001875.2 + 83217 0.68 0.965563
Target:  5'- gGCUGCGCAgcagcggcaccUGAaacucaaaGAGCGUGUACcACu -3'
miRNA:   3'- gCGACGCGU-----------ACUa-------CUUGCACAUG-UGc -5'
6902 5' -50.5 NC_001875.2 + 40171 0.69 0.96207
Target:  5'- aCGCgaUGCGCAUGG---GCGUgccGUACGCGu -3'
miRNA:   3'- -GCG--ACGCGUACUacuUGCA---CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 42746 0.74 0.774933
Target:  5'- gGCgacGCGCAUGGUGAGCG-GcGCGCu -3'
miRNA:   3'- gCGa--CGCGUACUACUUGCaCaUGUGc -5'
6902 5' -50.5 NC_001875.2 + 24782 0.73 0.803562
Target:  5'- gCGCUGUGCAUGAcagGuGCGUGaUugACGc -3'
miRNA:   3'- -GCGACGCGUACUa--CuUGCAC-AugUGC- -5'
6902 5' -50.5 NC_001875.2 + 110812 0.72 0.864
Target:  5'- aCGCcGCGCA-GGUGGACGcgcugGUGCGCc -3'
miRNA:   3'- -GCGaCGCGUaCUACUUGCa----CAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 116770 0.71 0.892995
Target:  5'- gCGCUGCGCGUGcaAUGAGuugaugcCGggGUACACc -3'
miRNA:   3'- -GCGACGCGUAC--UACUU-------GCa-CAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 92604 0.71 0.900498
Target:  5'- cCGCUGUGCAgagUGGUGGGCGcgagcggcuUGcGCGCGu -3'
miRNA:   3'- -GCGACGCGU---ACUACUUGC---------ACaUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 5936 0.69 0.96207
Target:  5'- gCGCcGCGCA-GGUGGGCGcggccucgcaGUACACGu -3'
miRNA:   3'- -GCGaCGCGUaCUACUUGCa---------CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 108255 0.66 0.993672
Target:  5'- gGCUGCgGCAUcauUGGG-GUGUGCGCa -3'
miRNA:   3'- gCGACG-CGUAcu-ACUUgCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 97394 0.78 0.554887
Target:  5'- uGCUGCGCGcgcauggcguUGAUGGGCGUGaauuUGCGCa -3'
miRNA:   3'- gCGACGCGU----------ACUACUUGCAC----AUGUGc -5'
6902 5' -50.5 NC_001875.2 + 5445 0.77 0.607886
Target:  5'- ---cGUGCAaGAUGGACGUGUGCGCa -3'
miRNA:   3'- gcgaCGCGUaCUACUUGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 54107 0.73 0.812779
Target:  5'- uGCUGCGCcgccGAauUGcGCGUGUACACu -3'
miRNA:   3'- gCGACGCGua--CU--ACuUGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 101408 0.72 0.84776
Target:  5'- aGCUGCGCGU--UGGACGcuuUGcUGCACGa -3'
miRNA:   3'- gCGACGCGUAcuACUUGC---AC-AUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.