miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 3' -59.6 NC_001875.2 + 40675 1.1 0.000973
Target:  5'- cGCCGCUGUGGACCAUGACGCGGCGCAu -3'
miRNA:   3'- -CGGCGACACCUGGUACUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 11192 0.78 0.176226
Target:  5'- cGCCGUUGUGGAgCAcGACGCcGCGCc -3'
miRNA:   3'- -CGGCGACACCUgGUaCUGCGcCGCGu -5'
6928 3' -59.6 NC_001875.2 + 16066 0.76 0.230035
Target:  5'- cGUCGCUGUGGACgCAcacGGCGCcgguuucGGCGCAc -3'
miRNA:   3'- -CGGCGACACCUG-GUa--CUGCG-------CCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 94244 0.75 0.241877
Target:  5'- cGCCGCcGUGcGGCCG-GcCGCGGCGCu -3'
miRNA:   3'- -CGGCGaCAC-CUGGUaCuGCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 2265 0.75 0.253623
Target:  5'- uGUCGCUGcGGGCCAuguugacgucgUGAUGCGcGCGCGc -3'
miRNA:   3'- -CGGCGACaCCUGGU-----------ACUGCGC-CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 109080 0.74 0.285035
Target:  5'- aGCCGCUGUGuGCCgGUGAUgugcuggaGCGGUGCGu -3'
miRNA:   3'- -CGGCGACACcUGG-UACUG--------CGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 37099 0.73 0.31944
Target:  5'- cGCCGCgugGGugUgcgGGCGCGGCGCc -3'
miRNA:   3'- -CGGCGacaCCugGua-CUGCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 37332 0.73 0.33405
Target:  5'- uGCCGUacuuUGUGGACUuUGcGCGCGGcCGCGc -3'
miRNA:   3'- -CGGCG----ACACCUGGuAC-UGCGCC-GCGU- -5'
6928 3' -59.6 NC_001875.2 + 124884 0.73 0.349142
Target:  5'- aGCgCGCcGUGG-CgAUGuCGCGGCGCAc -3'
miRNA:   3'- -CG-GCGaCACCuGgUACuGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 30216 0.72 0.364715
Target:  5'- gGCCGUUGUGGcgACCAcuuUGuACGUGGuCGCGu -3'
miRNA:   3'- -CGGCGACACC--UGGU---AC-UGCGCC-GCGU- -5'
6928 3' -59.6 NC_001875.2 + 119392 0.71 0.422883
Target:  5'- uGCCGCUGaaUGGcguCCAc--CGCGGCGCGc -3'
miRNA:   3'- -CGGCGAC--ACCu--GGUacuGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 23739 0.71 0.422883
Target:  5'- uGUCGCucaUGUGuauGGCCGUGAgUGCGGUGCAg -3'
miRNA:   3'- -CGGCG---ACAC---CUGGUACU-GCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 12447 0.71 0.440497
Target:  5'- cGCCGCgGUGGacGCCAUucaGCGGCaGCAg -3'
miRNA:   3'- -CGGCGaCACC--UGGUAcugCGCCG-CGU- -5'
6928 3' -59.6 NC_001875.2 + 13783 0.71 0.440497
Target:  5'- uCCGUUGUcGGACaaucgugcggGUGGCGCGGCGUu -3'
miRNA:   3'- cGGCGACA-CCUGg---------UACUGCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 98785 0.7 0.46768
Target:  5'- aGCCGCgc-GGaacGCUAUcGCGCGGCGCGg -3'
miRNA:   3'- -CGGCGacaCC---UGGUAcUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 49979 0.7 0.476932
Target:  5'- cGCUGCUGcUGuAgC-UGACGCGGCGCu -3'
miRNA:   3'- -CGGCGAC-ACcUgGuACUGCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 10419 0.7 0.482526
Target:  5'- cCCGCUGcacuacccaacauuUGGcgcagcaGCUuUGACGCGGCGCGg -3'
miRNA:   3'- cGGCGAC--------------ACC-------UGGuACUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 35391 0.7 0.50521
Target:  5'- cGCUGCUGU---CCGUGGCGC-GCGCGa -3'
miRNA:   3'- -CGGCGACAccuGGUACUGCGcCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 6993 0.69 0.514797
Target:  5'- gGCCGgUGUGGguguGCUGcUGGCcgGCGGCGCGu -3'
miRNA:   3'- -CGGCgACACC----UGGU-ACUG--CGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 86103 0.69 0.557781
Target:  5'- cGCCGCguuuacggcuucgcGUGGA-CGUGgccaucggcaguGCGCGGCGCGc -3'
miRNA:   3'- -CGGCGa-------------CACCUgGUAC------------UGCGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.