Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6928 | 3' | -59.6 | NC_001875.2 | + | 35629 | 0.68 | 0.603735 |
Target: 5'- cGCCGacgcGGACUAucUGGCGCaGCGCAa -3' miRNA: 3'- -CGGCgacaCCUGGU--ACUGCGcCGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 18175 | 0.68 | 0.573676 |
Target: 5'- cGCCGCcacUGUGGcgguGCCGgcgGGCGUaGGCGUg -3' miRNA: 3'- -CGGCG---ACACC----UGGUa--CUGCG-CCGCGu -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 39166 | 0.68 | 0.573676 |
Target: 5'- gGCCGCgagGcGGGCCGgcgGuuGCGUGGCGUu -3' miRNA: 3'- -CGGCGa--CaCCUGGUa--C--UGCGCCGCGu -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 58764 | 0.68 | 0.573676 |
Target: 5'- uGCgCGC-GUGGAggcaauCCcUGuCGCGGCGCAa -3' miRNA: 3'- -CG-GCGaCACCU------GGuACuGCGCCGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 10396 | 0.68 | 0.573676 |
Target: 5'- cGCCGCcGc--GCCGUGGCGCGGCa-- -3' miRNA: 3'- -CGGCGaCaccUGGUACUGCGCCGcgu -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 26329 | 0.68 | 0.580664 |
Target: 5'- aGCCGUgucgccaagcagUGUGuuuagggcaaagguGGCCAUGuACGCGGcCGCAa -3' miRNA: 3'- -CGGCG------------ACAC--------------CUGGUAC-UGCGCC-GCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 27463 | 0.68 | 0.583664 |
Target: 5'- uGUCGCUGgaguggGGugCGcGACGCuuuaGGCGCu -3' miRNA: 3'- -CGGCGACa-----CCugGUaCUGCG----CCGCGu -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 69001 | 0.68 | 0.593686 |
Target: 5'- uGCCGCgg-GGGCaagcacGugGUGGCGCGc -3' miRNA: 3'- -CGGCGacaCCUGgua---CugCGCCGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 109997 | 0.68 | 0.593686 |
Target: 5'- cGCgGUcgGUGG-CguUGACGCGcGCGCAg -3' miRNA: 3'- -CGgCGa-CACCuGguACUGCGC-CGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 129544 | 0.69 | 0.563728 |
Target: 5'- aGCUGCgcgcGGCCAcGGCGCGcGCGCAu -3' miRNA: 3'- -CGGCGacacCUGGUaCUGCGC-CGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 35391 | 0.7 | 0.50521 |
Target: 5'- cGCUGCUGU---CCGUGGCGC-GCGCGa -3' miRNA: 3'- -CGGCGACAccuGGUACUGCGcCGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 10419 | 0.7 | 0.482526 |
Target: 5'- cCCGCUGcacuacccaacauuUGGcgcagcaGCUuUGACGCGGCGCGg -3' miRNA: 3'- cGGCGAC--------------ACC-------UGGuACUGCGCCGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 11192 | 0.78 | 0.176226 |
Target: 5'- cGCCGUUGUGGAgCAcGACGCcGCGCc -3' miRNA: 3'- -CGGCGACACCUgGUaCUGCGcCGCGu -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 37099 | 0.73 | 0.31944 |
Target: 5'- cGCCGCgugGGugUgcgGGCGCGGCGCc -3' miRNA: 3'- -CGGCGacaCCugGua-CUGCGCCGCGu -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 37332 | 0.73 | 0.33405 |
Target: 5'- uGCCGUacuuUGUGGACUuUGcGCGCGGcCGCGc -3' miRNA: 3'- -CGGCG----ACACCUGGuAC-UGCGCC-GCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 30216 | 0.72 | 0.364715 |
Target: 5'- gGCCGUUGUGGcgACCAcuuUGuACGUGGuCGCGu -3' miRNA: 3'- -CGGCGACACC--UGGU---AC-UGCGCC-GCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 23739 | 0.71 | 0.422883 |
Target: 5'- uGUCGCucaUGUGuauGGCCGUGAgUGCGGUGCAg -3' miRNA: 3'- -CGGCG---ACAC---CUGGUACU-GCGCCGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 12447 | 0.71 | 0.440497 |
Target: 5'- cGCCGCgGUGGacGCCAUucaGCGGCaGCAg -3' miRNA: 3'- -CGGCGaCACC--UGGUAcugCGCCG-CGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 98785 | 0.7 | 0.46768 |
Target: 5'- aGCCGCgc-GGaacGCUAUcGCGCGGCGCGg -3' miRNA: 3'- -CGGCGacaCC---UGGUAcUGCGCCGCGU- -5' |
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6928 | 3' | -59.6 | NC_001875.2 | + | 49979 | 0.7 | 0.476932 |
Target: 5'- cGCUGCUGcUGuAgC-UGACGCGGCGCu -3' miRNA: 3'- -CGGCGAC-ACcUgGuACUGCGCCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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