miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 3' -59.6 NC_001875.2 + 545 0.67 0.633978
Target:  5'- cGUCGUUGUGGauguaGCCgGUGGCGuuGUGCAa -3'
miRNA:   3'- -CGGCGACACC-----UGG-UACUGCgcCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 2265 0.75 0.253623
Target:  5'- uGUCGCUGcGGGCCAuguugacgucgUGAUGCGcGCGCGc -3'
miRNA:   3'- -CGGCGACaCCUGGU-----------ACUGCGC-CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 6993 0.69 0.514797
Target:  5'- gGCCGgUGUGGguguGCUGcUGGCcgGCGGCGCGu -3'
miRNA:   3'- -CGGCgACACC----UGGU-ACUG--CGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 10396 0.68 0.573676
Target:  5'- cGCCGCcGc--GCCGUGGCGCGGCa-- -3'
miRNA:   3'- -CGGCGaCaccUGGUACUGCGCCGcgu -5'
6928 3' -59.6 NC_001875.2 + 10419 0.7 0.482526
Target:  5'- cCCGCUGcacuacccaacauuUGGcgcagcaGCUuUGACGCGGCGCGg -3'
miRNA:   3'- cGGCGAC--------------ACC-------UGGuACUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 11192 0.78 0.176226
Target:  5'- cGCCGUUGUGGAgCAcGACGCcGCGCc -3'
miRNA:   3'- -CGGCGACACCUgGUaCUGCGcCGCGu -5'
6928 3' -59.6 NC_001875.2 + 11943 0.66 0.70412
Target:  5'- cGCCGaCUGUGcgcgcGACCGgcGGCGCGuuGCAa -3'
miRNA:   3'- -CGGC-GACAC-----CUGGUa-CUGCGCcgCGU- -5'
6928 3' -59.6 NC_001875.2 + 12447 0.71 0.440497
Target:  5'- cGCCGCgGUGGacGCCAUucaGCGGCaGCAg -3'
miRNA:   3'- -CGGCGaCACC--UGGUAcugCGCCG-CGU- -5'
6928 3' -59.6 NC_001875.2 + 12677 0.66 0.694208
Target:  5'- cGCCGC-GUuGGCCggGUGugGCGGCa-- -3'
miRNA:   3'- -CGGCGaCAcCUGG--UACugCGCCGcgu -5'
6928 3' -59.6 NC_001875.2 + 13783 0.71 0.440497
Target:  5'- uCCGUUGUcGGACaaucgugcggGUGGCGCGGCGUu -3'
miRNA:   3'- cGGCGACA-CCUGg---------UACUGCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 14220 0.66 0.694208
Target:  5'- -aCGCUG-GGGCCGUG-CGCaaaGCGCc -3'
miRNA:   3'- cgGCGACaCCUGGUACuGCGc--CGCGu -5'
6928 3' -59.6 NC_001875.2 + 16066 0.76 0.230035
Target:  5'- cGUCGCUGUGGACgCAcacGGCGCcgguuucGGCGCAc -3'
miRNA:   3'- -CGGCGACACCUG-GUa--CUGCG-------CCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 16405 0.68 0.609775
Target:  5'- aGCUGCUGUGucccagcGACaCGUuugacagcaacacgGACGCGGCGUu -3'
miRNA:   3'- -CGGCGACAC-------CUG-GUA--------------CUGCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 17758 0.68 0.623889
Target:  5'- uGCCGCuUGUGGACacg---GCGGCGUu -3'
miRNA:   3'- -CGGCG-ACACCUGguacugCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 18175 0.68 0.573676
Target:  5'- cGCCGCcacUGUGGcgguGCCGgcgGGCGUaGGCGUg -3'
miRNA:   3'- -CGGCG---ACACC----UGGUa--CUGCG-CCGCGu -5'
6928 3' -59.6 NC_001875.2 + 18261 0.67 0.674244
Target:  5'- cGCCGUgcUGGcCCaAUGGCGCGccguGCGCGa -3'
miRNA:   3'- -CGGCGacACCuGG-UACUGCGC----CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 19718 0.66 0.732496
Target:  5'- -gCGCUGUGGGCCGaGGC-CGuaaacacguugaaGCGCAa -3'
miRNA:   3'- cgGCGACACCUGGUaCUGcGC-------------CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 22543 0.68 0.62288
Target:  5'- cGCCGCUuuaaacugGUuugagcgcucGGuuuuaacGCCcgGGCGCGGCGCGu -3'
miRNA:   3'- -CGGCGA--------CA----------CC-------UGGuaCUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 23739 0.71 0.422883
Target:  5'- uGUCGCucaUGUGuauGGCCGUGAgUGCGGUGCAg -3'
miRNA:   3'- -CGGCG---ACAC---CUGGUACU-GCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 26329 0.68 0.580664
Target:  5'- aGCCGUgucgccaagcagUGUGuuuagggcaaagguGGCCAUGuACGCGGcCGCAa -3'
miRNA:   3'- -CGGCG------------ACAC--------------CUGGUAC-UGCGCC-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.