miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 3' -53.3 NC_001875.2 + 43095 1.1 0.003558
Target:  5'- cUCGAACUCGCCGCAGUUUUGCGGCAGg -3'
miRNA:   3'- -AGCUUGAGCGGCGUCAAAACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 124974 0.81 0.281857
Target:  5'- -aGGACUCGCCGUAGcggucgUGCGGCAa -3'
miRNA:   3'- agCUUGAGCGGCGUCaaa---ACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 48419 0.79 0.33282
Target:  5'- aUUGAACggcaGCgCGCAGUUUUGCGGCGc -3'
miRNA:   3'- -AGCUUGag--CG-GCGUCAAAACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 85866 0.74 0.594806
Target:  5'- gCGAGUUCGCCGCAGcg--GCGGCu- -3'
miRNA:   3'- aGCUUGAGCGGCGUCaaaaCGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 100984 0.74 0.61585
Target:  5'- gCGcuGCagGCCGCGGcgUUUGCGGCGGu -3'
miRNA:   3'- aGCu-UGagCGGCGUCa-AAACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 7313 0.73 0.626396
Target:  5'- cCG-ACUCGCCGCAGUU-UGUGGaCGu -3'
miRNA:   3'- aGCuUGAGCGGCGUCAAaACGCC-GUc -5'
6932 3' -53.3 NC_001875.2 + 91430 0.73 0.658025
Target:  5'- cCGcAGCUCGCUGUAGcUgaGCGGCGGc -3'
miRNA:   3'- aGC-UUGAGCGGCGUCaAaaCGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 121146 0.72 0.720428
Target:  5'- uUCGAGCggggCGUC-CAGccgUUGCGGCAGc -3'
miRNA:   3'- -AGCUUGa---GCGGcGUCaa-AACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 46204 0.72 0.720428
Target:  5'- uUCGAGCUCGuuG-AGUg--GCGGCGc -3'
miRNA:   3'- -AGCUUGAGCggCgUCAaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 387 0.72 0.730605
Target:  5'- gUCGAAUgacCGCgCGUAGUUgugGCGGCGa -3'
miRNA:   3'- -AGCUUGa--GCG-GCGUCAAaa-CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 130282 0.7 0.78847
Target:  5'- aUCGG--UCGCCgGCGGUUgcgugguUUGCGGCAa -3'
miRNA:   3'- -AGCUugAGCGG-CGUCAA-------AACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 101218 0.7 0.789411
Target:  5'- gUCGAcgGCUuugguUGCgCGCAGUUUaaagGCGGCGGu -3'
miRNA:   3'- -AGCU--UGA-----GCG-GCGUCAAAa---CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 43861 0.7 0.798743
Target:  5'- gCGGGCgUCGCguaCGCGGgcgUUUGCGGUGGc -3'
miRNA:   3'- aGCUUG-AGCG---GCGUCa--AAACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 68548 0.7 0.816917
Target:  5'- gCGGuuuGC-CGCCGCGGcg--GCGGCGGu -3'
miRNA:   3'- aGCU---UGaGCGGCGUCaaaaCGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 12440 0.69 0.84614
Target:  5'- gCGuGCgCGCCGCGGUggacgccauucaGCGGCAGc -3'
miRNA:   3'- aGCuUGaGCGGCGUCAaaa---------CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 12912 0.69 0.851058
Target:  5'- gUGAACUCGCUGUauaugaacgaGGUcauUUUGCGGgGGu -3'
miRNA:   3'- aGCUUGAGCGGCG----------UCA---AAACGCCgUC- -5'
6932 3' -53.3 NC_001875.2 + 90030 0.69 0.851058
Target:  5'- -aGAGCUCGCCGCGcgccaugUUGCaGCAc -3'
miRNA:   3'- agCUUGAGCGGCGUcaa----AACGcCGUc -5'
6932 3' -53.3 NC_001875.2 + 88261 0.69 0.866894
Target:  5'- gUCGAgucGCUCGCCGCcAGcaugacGCuGGCGGg -3'
miRNA:   3'- -AGCU---UGAGCGGCG-UCaaaa--CG-CCGUC- -5'
6932 3' -53.3 NC_001875.2 + 49646 0.69 0.866894
Target:  5'- cCGuguACUCGCCGUAcugcccGCGGCGGu -3'
miRNA:   3'- aGCu--UGAGCGGCGUcaaaa-CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 89990 0.69 0.874479
Target:  5'- gUUGcAGCUCGCCGCcgcggcGCGGCAa -3'
miRNA:   3'- -AGC-UUGAGCGGCGucaaaaCGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.