miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 3' -53.3 NC_001875.2 + 387 0.72 0.730605
Target:  5'- gUCGAAUgacCGCgCGUAGUUgugGCGGCGa -3'
miRNA:   3'- -AGCUUGa--GCG-GCGUCAAaa-CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 2453 0.67 0.920871
Target:  5'- aCGuAAC-CGUCGCGGUUguaggcGCGGCAc -3'
miRNA:   3'- aGC-UUGaGCGGCGUCAAaa----CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 7313 0.73 0.626396
Target:  5'- cCG-ACUCGCCGCAGUU-UGUGGaCGu -3'
miRNA:   3'- aGCuUGAGCGGCGUCAAaACGCC-GUc -5'
6932 3' -53.3 NC_001875.2 + 10390 0.67 0.920871
Target:  5'- uUUGAACgcCGCCGCGccGUggcGCGGCAc -3'
miRNA:   3'- -AGCUUGa-GCGGCGU--CAaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 11860 0.68 0.881834
Target:  5'- aCGAGCggGuCCGaaCAGUUUgUGCGGCAGc -3'
miRNA:   3'- aGCUUGagC-GGC--GUCAAA-ACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 12440 0.69 0.84614
Target:  5'- gCGuGCgCGCCGCGGUggacgccauucaGCGGCAGc -3'
miRNA:   3'- aGCuUGaGCGGCGUCAaaa---------CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 12912 0.69 0.851058
Target:  5'- gUGAACUCGCUGUauaugaacgaGGUcauUUUGCGGgGGu -3'
miRNA:   3'- aGCUUGAGCGGCG----------UCA---AAACGCCgUC- -5'
6932 3' -53.3 NC_001875.2 + 16071 0.68 0.888953
Target:  5'- cUCGAggacgGCUCGCgGCGGUUUgaaaUGCGcuGCAa -3'
miRNA:   3'- -AGCU-----UGAGCGgCGUCAAA----ACGC--CGUc -5'
6932 3' -53.3 NC_001875.2 + 21692 0.66 0.954979
Target:  5'- aCGAGCgCGaCGCGGUgcUGCGGUc- -3'
miRNA:   3'- aGCUUGaGCgGCGUCAaaACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 23139 0.66 0.946485
Target:  5'- uUUGggUUUGCgCGCAGUcgaaggGCGGCu- -3'
miRNA:   3'- -AGCuuGAGCG-GCGUCAaaa---CGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 33228 0.68 0.881834
Target:  5'- gCGGGCUCGCCGgGcgccGUUUcggcGCGGCGc -3'
miRNA:   3'- aGCUUGAGCGGCgU----CAAAa---CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 35844 0.68 0.902465
Target:  5'- gUCGcACUCGacgaCGCGGUUUUGuUGcGCAGc -3'
miRNA:   3'- -AGCuUGAGCg---GCGUCAAAAC-GC-CGUC- -5'
6932 3' -53.3 NC_001875.2 + 36091 0.67 0.936998
Target:  5'- aCGcGCUCGCgCgGCAGcacgcgGCGGCGGc -3'
miRNA:   3'- aGCuUGAGCG-G-CGUCaaaa--CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 38803 0.66 0.946485
Target:  5'- uUCGGcgcugcaauuGCUCGUgguugUGCAGUUgcGCGGCGa -3'
miRNA:   3'- -AGCU----------UGAGCG-----GCGUCAAaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 39648 0.68 0.895831
Target:  5'- gCGAAC-CGCgCGCgAGUUUgggccgGCGGCGc -3'
miRNA:   3'- aGCUUGaGCG-GCG-UCAAAa-----CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 43095 1.1 0.003558
Target:  5'- cUCGAACUCGCCGCAGUUUUGCGGCAGg -3'
miRNA:   3'- -AGCUUGAGCGGCGUCAAAACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 43662 0.67 0.931876
Target:  5'- gUCGGGCa-GCgGCAcGUUUUGUGGUAa -3'
miRNA:   3'- -AGCUUGagCGgCGU-CAAAACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 43758 0.67 0.920871
Target:  5'- gUCGGGCaacaCGaCGCAGUUgUGCGGCc- -3'
miRNA:   3'- -AGCUUGa---GCgGCGUCAAaACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 43861 0.7 0.798743
Target:  5'- gCGGGCgUCGCguaCGCGGgcgUUUGCGGUGGc -3'
miRNA:   3'- aGCUUG-AGCG---GCGUCa--AAACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 45622 0.67 0.936998
Target:  5'- cUCcAACaccaGCCGCaAGUUgUGCGGCGGc -3'
miRNA:   3'- -AGcUUGag--CGGCG-UCAAaACGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.