miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 3' -53.3 NC_001875.2 + 56067 0.66 0.950855
Target:  5'- uUUGAGCUCGCUGCG---UUGCuugaGCAGc -3'
miRNA:   3'- -AGCUUGAGCGGCGUcaaAACGc---CGUC- -5'
6932 3' -53.3 NC_001875.2 + 39648 0.68 0.895831
Target:  5'- gCGAAC-CGCgCGCgAGUUUgggccgGCGGCGc -3'
miRNA:   3'- aGCUUGaGCG-GCG-UCAAAa-----CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 35844 0.68 0.902465
Target:  5'- gUCGcACUCGacgaCGCGGUUUUGuUGcGCAGc -3'
miRNA:   3'- -AGCuUGAGCg---GCGUCAAAAC-GC-CGUC- -5'
6932 3' -53.3 NC_001875.2 + 43758 0.67 0.920871
Target:  5'- gUCGGGCaacaCGaCGCAGUUgUGCGGCc- -3'
miRNA:   3'- -AGCUUGa---GCgGCGUCAAaACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 10390 0.67 0.920871
Target:  5'- uUUGAACgcCGCCGCGccGUggcGCGGCAc -3'
miRNA:   3'- -AGCUUGa-GCGGCGU--CAaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 73844 0.67 0.9265
Target:  5'- uUCGAGCaagCGCUGguGccguuggUGCGGCGc -3'
miRNA:   3'- -AGCUUGa--GCGGCguCaaa----ACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 56897 0.67 0.931876
Target:  5'- gUCGuAC-CGCCGCAGca--GCGGCu- -3'
miRNA:   3'- -AGCuUGaGCGGCGUCaaaaCGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 45622 0.67 0.936998
Target:  5'- cUCcAACaccaGCCGCaAGUUgUGCGGCGGc -3'
miRNA:   3'- -AGcUUGag--CGGCG-UCAAaACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 49998 0.67 0.936998
Target:  5'- gCGGcGCUUGUCGCGGUUgggGCGcGCGu -3'
miRNA:   3'- aGCU-UGAGCGGCGUCAAaa-CGC-CGUc -5'
6932 3' -53.3 NC_001875.2 + 16071 0.68 0.888953
Target:  5'- cUCGAggacgGCUCGCgGCGGUUUgaaaUGCGcuGCAa -3'
miRNA:   3'- -AGCU-----UGAGCGgCGUCAAA----ACGC--CGUc -5'
6932 3' -53.3 NC_001875.2 + 54451 0.68 0.881834
Target:  5'- gUCGuuagccGCggCGCCGCAcagcgugUGCGGCAGg -3'
miRNA:   3'- -AGCu-----UGa-GCGGCGUcaaa---ACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 11860 0.68 0.881834
Target:  5'- aCGAGCggGuCCGaaCAGUUUgUGCGGCAGc -3'
miRNA:   3'- aGCUUGagC-GGC--GUCAAA-ACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 85866 0.74 0.594806
Target:  5'- gCGAGUUCGCCGCAGcg--GCGGCu- -3'
miRNA:   3'- aGCUUGAGCGGCGUCaaaaCGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 91430 0.73 0.658025
Target:  5'- cCGcAGCUCGCUGUAGcUgaGCGGCGGc -3'
miRNA:   3'- aGC-UUGAGCGGCGUCaAaaCGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 46204 0.72 0.720428
Target:  5'- uUCGAGCUCGuuG-AGUg--GCGGCGc -3'
miRNA:   3'- -AGCUUGAGCggCgUCAaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 387 0.72 0.730605
Target:  5'- gUCGAAUgacCGCgCGUAGUUgugGCGGCGa -3'
miRNA:   3'- -AGCUUGa--GCG-GCGUCAAaa-CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 68548 0.7 0.816917
Target:  5'- gCGGuuuGC-CGCCGCGGcg--GCGGCGGu -3'
miRNA:   3'- aGCU---UGaGCGGCGUCaaaaCGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 12440 0.69 0.84614
Target:  5'- gCGuGCgCGCCGCGGUggacgccauucaGCGGCAGc -3'
miRNA:   3'- aGCuUGaGCGGCGUCAaaa---------CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 90030 0.69 0.851058
Target:  5'- -aGAGCUCGCCGCGcgccaugUUGCaGCAc -3'
miRNA:   3'- agCUUGAGCGGCGUcaa----AACGcCGUc -5'
6932 3' -53.3 NC_001875.2 + 33228 0.68 0.881834
Target:  5'- gCGGGCUCGCCGgGcgccGUUUcggcGCGGCGc -3'
miRNA:   3'- aGCUUGAGCGGCgU----CAAAa---CGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.