miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6943 3' -51.6 NC_001875.2 + 52394 1.11 0.003798
Target:  5'- cAAACGCCAGCUACCUGCUGUUCAAGCa -3'
miRNA:   3'- -UUUGCGGUCGAUGGACGACAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 124847 0.76 0.510613
Target:  5'- -cGCGCCAcGUcgaagcaaagaUGCCcGCUGUUCAAGCa -3'
miRNA:   3'- uuUGCGGU-CG-----------AUGGaCGACAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 85824 0.75 0.570802
Target:  5'- cGGCGCCAGCUGcgugggcggccgauCCUGCUGUUgu-GCa -3'
miRNA:   3'- uUUGCGGUCGAU--------------GGACGACAAguuCG- -5'
6943 3' -51.6 NC_001875.2 + 93308 0.75 0.595613
Target:  5'- -uACGCCAGUUACCaGCUcGgcCGAGCg -3'
miRNA:   3'- uuUGCGGUCGAUGGaCGA-CaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 37888 0.75 0.617321
Target:  5'- -cGCGCCAGCgGCUUGCUGgcgcGGCa -3'
miRNA:   3'- uuUGCGGUCGaUGGACGACaaguUCG- -5'
6943 3' -51.6 NC_001875.2 + 92249 0.74 0.671646
Target:  5'- --uCGCgGGCUugCUGCUGUUgCuAGCa -3'
miRNA:   3'- uuuGCGgUCGAugGACGACAA-GuUCG- -5'
6943 3' -51.6 NC_001875.2 + 93399 0.73 0.682442
Target:  5'- -cGCGCCGGC-ACUUGCUGcuUUCGuaGGCg -3'
miRNA:   3'- uuUGCGGUCGaUGGACGAC--AAGU--UCG- -5'
6943 3' -51.6 NC_001875.2 + 95964 0.73 0.682442
Target:  5'- -uACGCCAGCuUGCUUGaaaUGUcCGAGCg -3'
miRNA:   3'- uuUGCGGUCG-AUGGACg--ACAaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 94466 0.72 0.745856
Target:  5'- --cUGCUGGCUGCCcggGCUGUUCAAa- -3'
miRNA:   3'- uuuGCGGUCGAUGGa--CGACAAGUUcg -5'
6943 3' -51.6 NC_001875.2 + 17057 0.72 0.745856
Target:  5'- cAACGCgagCAGCUGCCcGCUGgugaagcuggUCAGGCc -3'
miRNA:   3'- uUUGCG---GUCGAUGGaCGACa---------AGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 7331 0.72 0.745856
Target:  5'- uGGACGUCAGCgACCUGCUGccc-GGCc -3'
miRNA:   3'- -UUUGCGGUCGaUGGACGACaaguUCG- -5'
6943 3' -51.6 NC_001875.2 + 100605 0.72 0.756096
Target:  5'- cGGGCGCCGGCcgcgGCC-GCUGUUUgccucguggauGAGCa -3'
miRNA:   3'- -UUUGCGGUCGa---UGGaCGACAAG-----------UUCG- -5'
6943 3' -51.6 NC_001875.2 + 10967 0.72 0.776193
Target:  5'- uGACGCaAGCgGCCUGCag-UCAAGCg -3'
miRNA:   3'- uUUGCGgUCGaUGGACGacaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 2757 0.71 0.786028
Target:  5'- aAGGCGCCAGCgg-CUGCUcccGggCAGGCu -3'
miRNA:   3'- -UUUGCGGUCGaugGACGA---CaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 30860 0.71 0.786028
Target:  5'- cAAACGCC-GCgGCCUGCaGcgCGGGCg -3'
miRNA:   3'- -UUUGCGGuCGaUGGACGaCaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 101402 0.71 0.823701
Target:  5'- -cGCGCCAGCUGCgcguuggacgcuUUGCUGcaCGAGUu -3'
miRNA:   3'- uuUGCGGUCGAUG------------GACGACaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 61602 0.7 0.849925
Target:  5'- cGGGCGCCGGCggcGCUucggGCUGUgucggcggcgccUCGGGCg -3'
miRNA:   3'- -UUUGCGGUCGa--UGGa---CGACA------------AGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 30212 0.7 0.858231
Target:  5'- -cGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1434 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1338 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.