miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6943 3' -51.6 NC_001875.2 + 70863 0.68 0.915846
Target:  5'- -uGCGCCAGCgccgACCcGCU-UUCGAGa -3'
miRNA:   3'- uuUGCGGUCGa---UGGaCGAcAAGUUCg -5'
6943 3' -51.6 NC_001875.2 + 77662 0.69 0.881736
Target:  5'- uGGACGCCAacGCagcGCC-GCUGUcCGAGCg -3'
miRNA:   3'- -UUUGCGGU--CGa--UGGaCGACAaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 114676 0.69 0.896163
Target:  5'- -uGCGUCAGCggcgACCgUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGa---UGG-ACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 91212 0.69 0.902989
Target:  5'- -cGCGcCCAGUUgaGCUUGUUGUaCAGGCu -3'
miRNA:   3'- uuUGC-GGUCGA--UGGACGACAaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 42450 0.69 0.902989
Target:  5'- -uGCGUCAGCgGCC-GCUGcggCGAGCc -3'
miRNA:   3'- uuUGCGGUCGaUGGaCGACaa-GUUCG- -5'
6943 3' -51.6 NC_001875.2 + 111814 0.69 0.902989
Target:  5'- cGGCGCCuGGCUGCUccgcgugacgGCUGcgCGAGCc -3'
miRNA:   3'- uUUGCGG-UCGAUGGa---------CGACaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 60757 0.68 0.909551
Target:  5'- cAGCGaCAGCUGCaUGCUuUUCAAGUg -3'
miRNA:   3'- uUUGCgGUCGAUGgACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 47702 0.68 0.915846
Target:  5'- cAACGCgGGgcaagugcacgaCUGCCUGCUGcUUGAGCc -3'
miRNA:   3'- uUUGCGgUC------------GAUGGACGACaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 4534 0.68 0.915846
Target:  5'- --cCGCCGGCUGcgguuCCUGCgGUUUggGg -3'
miRNA:   3'- uuuGCGGUCGAU-----GGACGaCAAGuuCg -5'
6943 3' -51.6 NC_001875.2 + 43571 0.69 0.881736
Target:  5'- --cCGCCAGCgucaUGCUGgcggCGAGCg -3'
miRNA:   3'- uuuGCGGUCGauggACGACaa--GUUCG- -5'
6943 3' -51.6 NC_001875.2 + 98567 0.69 0.874914
Target:  5'- aGAACGCgCuGCUGCCgccgucccuguuccaGCUGUUCAAacGCa -3'
miRNA:   3'- -UUUGCG-GuCGAUGGa--------------CGACAAGUU--CG- -5'
6943 3' -51.6 NC_001875.2 + 30860 0.71 0.786028
Target:  5'- cAAACGCC-GCgGCCUGCaGcgCGGGCg -3'
miRNA:   3'- -UUUGCGGuCGaUGGACGaCaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 85824 0.75 0.570802
Target:  5'- cGGCGCCAGCUGcgugggcggccgauCCUGCUGUUgu-GCa -3'
miRNA:   3'- uUUGCGGUCGAU--------------GGACGACAAguuCG- -5'
6943 3' -51.6 NC_001875.2 + 93308 0.75 0.595613
Target:  5'- -uACGCCAGUUACCaGCUcGgcCGAGCg -3'
miRNA:   3'- uuUGCGGUCGAUGGaCGA-CaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 37888 0.75 0.617321
Target:  5'- -cGCGCCAGCgGCUUGCUGgcgcGGCa -3'
miRNA:   3'- uuUGCGGUCGaUGGACGACaaguUCG- -5'
6943 3' -51.6 NC_001875.2 + 95964 0.73 0.682442
Target:  5'- -uACGCCAGCuUGCUUGaaaUGUcCGAGCg -3'
miRNA:   3'- uuUGCGGUCG-AUGGACg--ACAaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 17057 0.72 0.745856
Target:  5'- cAACGCgagCAGCUGCCcGCUGgugaagcuggUCAGGCc -3'
miRNA:   3'- uUUGCG---GUCGAUGGaCGACa---------AGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 94466 0.72 0.745856
Target:  5'- --cUGCUGGCUGCCcggGCUGUUCAAa- -3'
miRNA:   3'- uuuGCGGUCGAUGGa--CGACAAGUUcg -5'
6943 3' -51.6 NC_001875.2 + 100605 0.72 0.756096
Target:  5'- cGGGCGCCGGCcgcgGCC-GCUGUUUgccucguggauGAGCa -3'
miRNA:   3'- -UUUGCGGUCGa---UGGaCGACAAG-----------UUCG- -5'
6943 3' -51.6 NC_001875.2 + 10967 0.72 0.776193
Target:  5'- uGACGCaAGCgGCCUGCag-UCAAGCg -3'
miRNA:   3'- uUUGCGgUCGaUGGACGacaAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.