miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6943 3' -51.6 NC_001875.2 + 1338 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1434 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1566 0.7 0.866306
Target:  5'- -uGCGUCAGCgacgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1632 0.7 0.866306
Target:  5'- -uGCGUCAGCgacgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1698 0.7 0.866306
Target:  5'- -uGCGUCAGCgacgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1824 0.68 0.938331
Target:  5'- -uGCGUCAGCaacgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1890 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 2703 0.66 0.976361
Target:  5'- cAGACuCCAGCaucACCUGCUccaaCAAGCg -3'
miRNA:   3'- -UUUGcGGUCGa--UGGACGAcaa-GUUCG- -5'
6943 3' -51.6 NC_001875.2 + 2757 0.71 0.786028
Target:  5'- aAGGCGCCAGCgg-CUGCUcccGggCAGGCu -3'
miRNA:   3'- -UUUGCGGUCGaugGACGA---CaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 4534 0.68 0.915846
Target:  5'- --cCGCCGGCUGcgguuCCUGCgGUUUggGg -3'
miRNA:   3'- uuuGCGGUCGAU-----GGACGaCAAGuuCg -5'
6943 3' -51.6 NC_001875.2 + 7331 0.72 0.745856
Target:  5'- uGGACGUCAGCgACCUGCUGccc-GGCc -3'
miRNA:   3'- -UUUGCGGUCGaUGGACGACaaguUCG- -5'
6943 3' -51.6 NC_001875.2 + 10967 0.72 0.776193
Target:  5'- uGACGCaAGCgGCCUGCag-UCAAGCg -3'
miRNA:   3'- uUUGCGgUCGaUGGACGacaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 17057 0.72 0.745856
Target:  5'- cAACGCgagCAGCUGCCcGCUGgugaagcuggUCAGGCc -3'
miRNA:   3'- uUUGCG---GUCGAUGGaCGACa---------AGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 25343 0.66 0.964099
Target:  5'- cGACGCgGGCUacACCggcgaGCUGUUUuucaAAGCc -3'
miRNA:   3'- uUUGCGgUCGA--UGGa----CGACAAG----UUCG- -5'
6943 3' -51.6 NC_001875.2 + 30212 0.7 0.858231
Target:  5'- -cGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 30278 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 30344 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 30410 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 30476 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 30542 0.7 0.866306
Target:  5'- -uGCGUCAGCggcgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.