miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6951 5' -53.1 NC_001875.2 + 65144 0.66 0.970756
Target:  5'- -gGUGUCGgaGGCGGucACGUGcAGCAu -3'
miRNA:   3'- ggCACAGUg-CCGCCuuUGCGC-UUGUu -5'
6951 5' -53.1 NC_001875.2 + 76712 0.66 0.970756
Target:  5'- gCCGUcgGUCGCGcugagcguCGGuGACGCGGACGc -3'
miRNA:   3'- -GGCA--CAGUGCc-------GCCuUUGCGCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 35399 0.66 0.967708
Target:  5'- uCCGUGgCGCGcGCGaGcGACGCcGACAAg -3'
miRNA:   3'- -GGCACaGUGC-CGC-CuUUGCGcUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 46509 0.66 0.967708
Target:  5'- gCGU-UCGCGGCGGGcggGGCGaGAGCGc -3'
miRNA:   3'- gGCAcAGUGCCGCCU---UUGCgCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 37965 0.66 0.967708
Target:  5'- -gGUGUucaCGCGGCGGccuGCGCGcuCAGc -3'
miRNA:   3'- ggCACA---GUGCCGCCuu-UGCGCuuGUU- -5'
6951 5' -53.1 NC_001875.2 + 101739 0.66 0.967708
Target:  5'- ---cGUCACGGCGuacAGCGCGcACAGc -3'
miRNA:   3'- ggcaCAGUGCCGCcu-UUGCGCuUGUU- -5'
6951 5' -53.1 NC_001875.2 + 93781 0.66 0.967708
Target:  5'- gCCGU-UUACGGCGcAAgucGCGCGGGCGu -3'
miRNA:   3'- -GGCAcAGUGCCGCcUU---UGCGCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 70915 0.66 0.96095
Target:  5'- aCGUG-CACGGCGuGAggUGUcAGCAc -3'
miRNA:   3'- gGCACaGUGCCGC-CUuuGCGcUUGUu -5'
6951 5' -53.1 NC_001875.2 + 130282 0.66 0.96095
Target:  5'- aUCG-GUCGcCGGCGGuuGCGUGGuuugcgGCAAa -3'
miRNA:   3'- -GGCaCAGU-GCCGCCuuUGCGCU------UGUU- -5'
6951 5' -53.1 NC_001875.2 + 108872 0.66 0.957228
Target:  5'- gUCGcUGgaaagCGCGGCGGAGGCGU--ACAu -3'
miRNA:   3'- -GGC-ACa----GUGCCGCCUUUGCGcuUGUu -5'
6951 5' -53.1 NC_001875.2 + 116912 0.66 0.957228
Target:  5'- gCCGcG-CGCGGCGG-GugGCGcACAAu -3'
miRNA:   3'- -GGCaCaGUGCCGCCuUugCGCuUGUU- -5'
6951 5' -53.1 NC_001875.2 + 97418 0.66 0.957228
Target:  5'- aUG-GUCGCGGCGGcGACcGCGuACGu -3'
miRNA:   3'- gGCaCAGUGCCGCCuUUG-CGCuUGUu -5'
6951 5' -53.1 NC_001875.2 + 48 0.67 0.953272
Target:  5'- -gGUGcUCAacuCGGCGGcgGCGgCGAACGAc -3'
miRNA:   3'- ggCAC-AGU---GCCGCCuuUGC-GCUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 88508 0.67 0.949075
Target:  5'- aCGUGgugCGCGGCGGcAAccacgccgacccGCGCGcGCGc -3'
miRNA:   3'- gGCACa--GUGCCGCC-UU------------UGCGCuUGUu -5'
6951 5' -53.1 NC_001875.2 + 71128 0.67 0.949075
Target:  5'- gCUGUGgCugGGCGGccucAGCGCGGccGCGu -3'
miRNA:   3'- -GGCACaGugCCGCCu---UUGCGCU--UGUu -5'
6951 5' -53.1 NC_001875.2 + 38149 0.67 0.948642
Target:  5'- aCGUGUCcaaguccAUGcGCGuGAACGCGAGCGc -3'
miRNA:   3'- gGCACAG-------UGC-CGCcUUUGCGCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 49645 0.68 0.926605
Target:  5'- cCCGUGUacucgccguacugccCGCGGCGGuuGCGCa----- -3'
miRNA:   3'- -GGCACA---------------GUGCCGCCuuUGCGcuuguu -5'
6951 5' -53.1 NC_001875.2 + 39317 0.68 0.918718
Target:  5'- aCCGUG-C-CGGCGGcguGCGCGcgcuGCAGg -3'
miRNA:   3'- -GGCACaGuGCCGCCuu-UGCGCu---UGUU- -5'
6951 5' -53.1 NC_001875.2 + 42730 0.68 0.912784
Target:  5'- cCCGgucGUCGCGcGCGGcGACGCGcAugGu -3'
miRNA:   3'- -GGCa--CAGUGC-CGCCuUUGCGC-UugUu -5'
6951 5' -53.1 NC_001875.2 + 82940 0.68 0.906603
Target:  5'- uCCGUcgucucggucGUCGCGGCGG--GCGCGuccucGGCGAc -3'
miRNA:   3'- -GGCA----------CAGUGCCGCCuuUGCGC-----UUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.