miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6952 3' -55.1 NC_001875.2 + 62255 1.06 0.00438
Target:  5'- uAAAGCGCCACACGUACUCCGACACCUg -3'
miRNA:   3'- -UUUCGCGGUGUGCAUGAGGCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 36981 0.77 0.344231
Target:  5'- --cGCGCCugGCGUACguggCCGAUAUCg -3'
miRNA:   3'- uuuCGCGGugUGCAUGa---GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 6828 0.76 0.367673
Target:  5'- --uGCGCCGCgucgacaACGUGC-CCGACGCCa -3'
miRNA:   3'- uuuCGCGGUG-------UGCAUGaGGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 63272 0.73 0.505997
Target:  5'- -cGGCGCCACGCgGUGCgcgaCCGcCGCCg -3'
miRNA:   3'- uuUCGCGGUGUG-CAUGa---GGCuGUGGa -5'
6952 3' -55.1 NC_001875.2 + 66040 0.73 0.546373
Target:  5'- -uGGCGCCGCGCaGgcaccGCgcgCCGACGCCg -3'
miRNA:   3'- uuUCGCGGUGUG-Ca----UGa--GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 66695 0.72 0.566951
Target:  5'- ---aUGCUGCACGUGaccgcCUCCGACACCa -3'
miRNA:   3'- uuucGCGGUGUGCAU-----GAGGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 111752 0.72 0.566951
Target:  5'- uGGGGCGCCcauCACGUGCgCCGACgACUg -3'
miRNA:   3'- -UUUCGCGGu--GUGCAUGaGGCUG-UGGa -5'
6952 3' -55.1 NC_001875.2 + 70326 0.72 0.608626
Target:  5'- cAAGCGCgagCACGCGgACUgCGGCGCCg -3'
miRNA:   3'- uUUCGCG---GUGUGCaUGAgGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 97884 0.71 0.638003
Target:  5'- --cGCGCCGCACGggcacguugcggGCgucggcgCCGACGCCc -3'
miRNA:   3'- uuuCGCGGUGUGCa-----------UGa------GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 129164 0.71 0.640102
Target:  5'- cGAGGCGCCGCA-GUugccccagGCgccgCCGGCGCCg -3'
miRNA:   3'- -UUUCGCGGUGUgCA--------UGa---GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 69104 0.71 0.650592
Target:  5'- --cGgGCCACACGUACauuacggCCGACAUUg -3'
miRNA:   3'- uuuCgCGGUGUGCAUGa------GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 62836 0.7 0.691271
Target:  5'- --cGCGCCAcCACGUGCUUgcccccgCGGCACUc -3'
miRNA:   3'- uuuCGCGGU-GUGCAUGAG-------GCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 92528 0.7 0.692306
Target:  5'- --cGCGCCcgGCGCGUuuuCUCUGcACACCa -3'
miRNA:   3'- uuuCGCGG--UGUGCAu--GAGGC-UGUGGa -5'
6952 3' -55.1 NC_001875.2 + 20042 0.7 0.692306
Target:  5'- cAGGCGCCGucggcCGCGUGCaccgCCGuCACCa -3'
miRNA:   3'- uUUCGCGGU-----GUGCAUGa---GGCuGUGGa -5'
6952 3' -55.1 NC_001875.2 + 98921 0.7 0.702626
Target:  5'- --cGCGCuCACGCaaGUGCUC-GACACCUu -3'
miRNA:   3'- uuuCGCG-GUGUG--CAUGAGgCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 40787 0.7 0.702626
Target:  5'- --cGUGCUGCGCGUGC-CCaGCACCa -3'
miRNA:   3'- uuuCGCGGUGUGCAUGaGGcUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 81920 0.7 0.712885
Target:  5'- -uAGCG-CGCGCG-GCUCCGACgACCa -3'
miRNA:   3'- uuUCGCgGUGUGCaUGAGGCUG-UGGa -5'
6952 3' -55.1 NC_001875.2 + 116767 0.7 0.721039
Target:  5'- cAGGCGCUGCGCGUGCaaugaguugaugCCGggguACACCUg -3'
miRNA:   3'- uUUCGCGGUGUGCAUGa-----------GGC----UGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 38271 0.69 0.752108
Target:  5'- aAGAGCGCCucgcagcGCGCGUACgaCGACGCg- -3'
miRNA:   3'- -UUUCGCGG-------UGUGCAUGagGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 47442 0.69 0.753094
Target:  5'- --cGCGCCGC-CGccgaaGCUCCGGCuACCg -3'
miRNA:   3'- uuuCGCGGUGuGCa----UGAGGCUG-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.