miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6952 3' -55.1 NC_001875.2 + 2674 0.67 0.852585
Target:  5'- -cGGCGCCugGgGcaACUgCGGCGCCUc -3'
miRNA:   3'- uuUCGCGGugUgCa-UGAgGCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 6828 0.76 0.367673
Target:  5'- --uGCGCCGCgucgacaACGUGC-CCGACGCCa -3'
miRNA:   3'- uuuCGCGGUG-------UGCAUGaGGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 7798 0.69 0.772566
Target:  5'- --uGUGCCACGuCGUGCUUUcGCGCCg -3'
miRNA:   3'- uuuCGCGGUGU-GCAUGAGGcUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 9101 0.68 0.800761
Target:  5'- -cGGCGCUAaaccccgcCACGaACUCgGACGCCg -3'
miRNA:   3'- uuUCGCGGU--------GUGCaUGAGgCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 9733 0.67 0.841941
Target:  5'- cGAAGCGUgGCACGUguugagcguccaccGCcguUCCGAgGCCa -3'
miRNA:   3'- -UUUCGCGgUGUGCA--------------UG---AGGCUgUGGa -5'
6952 3' -55.1 NC_001875.2 + 12967 0.66 0.903458
Target:  5'- --cGCGgCGgGCGUggGCUCCG-CGCCg -3'
miRNA:   3'- uuuCGCgGUgUGCA--UGAGGCuGUGGa -5'
6952 3' -55.1 NC_001875.2 + 19945 0.67 0.844428
Target:  5'- cGGAGCgGCCgGCGCG-ACgguccggCCGGCGCCUc -3'
miRNA:   3'- -UUUCG-CGG-UGUGCaUGa------GGCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 20042 0.7 0.692306
Target:  5'- cAGGCGCCGucggcCGCGUGCaccgCCGuCACCa -3'
miRNA:   3'- uUUCGCGGU-----GUGCAUGa---GGCuGUGGa -5'
6952 3' -55.1 NC_001875.2 + 22582 0.66 0.875769
Target:  5'- cGGGCGCgGCGCGUugGCcggCCGGCugUa -3'
miRNA:   3'- uUUCGCGgUGUGCA--UGa--GGCUGugGa -5'
6952 3' -55.1 NC_001875.2 + 24342 0.68 0.809851
Target:  5'- --cGUGCCGCgGCGUucaGCUCCaGAUACCc -3'
miRNA:   3'- uuuCGCGGUG-UGCA---UGAGG-CUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 30659 0.66 0.883047
Target:  5'- uGGGCGCCgGCACGUAauugaCCaGCGCCa -3'
miRNA:   3'- uUUCGCGG-UGUGCAUga---GGcUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 30936 0.68 0.809851
Target:  5'- cGAGCGUCucCGCGcGCUgCGGCGCCc -3'
miRNA:   3'- uUUCGCGGu-GUGCaUGAgGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 31252 0.67 0.860532
Target:  5'- -cGGCGCCcggccCGCGUACgcgUCGACGCa- -3'
miRNA:   3'- uuUCGCGGu----GUGCAUGa--GGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 31766 0.66 0.883047
Target:  5'- uAGGUGCCaaGCGCGUGCcCCagcaGCACCg -3'
miRNA:   3'- uUUCGCGG--UGUGCAUGaGGc---UGUGGa -5'
6952 3' -55.1 NC_001875.2 + 32441 0.67 0.852585
Target:  5'- --uGCGCUGCGCG-ACccgCUGGCGCCg -3'
miRNA:   3'- uuuCGCGGUGUGCaUGa--GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 32577 0.66 0.89009
Target:  5'- -cAGUGCCGCGCGcACcUCGACuaGCCg -3'
miRNA:   3'- uuUCGCGGUGUGCaUGaGGCUG--UGGa -5'
6952 3' -55.1 NC_001875.2 + 32797 0.68 0.809851
Target:  5'- cGGGCGCCGCGcCGgcaaGCUCggcgaaCGGCGCCg -3'
miRNA:   3'- uUUCGCGGUGU-GCa---UGAG------GCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 36981 0.77 0.344231
Target:  5'- --cGCGCCugGCGUACguggCCGAUAUCg -3'
miRNA:   3'- uuuCGCGGugUGCAUGa---GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 38271 0.69 0.752108
Target:  5'- aAGAGCGCCucgcagcGCGCGUACgaCGACGCg- -3'
miRNA:   3'- -UUUCGCGG-------UGUGCAUGagGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 38476 0.68 0.818771
Target:  5'- -uGGUGCaGCGCGUGCUC-GACACUc -3'
miRNA:   3'- uuUCGCGgUGUGCAUGAGgCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.