miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6952 3' -55.1 NC_001875.2 + 71931 0.68 0.818771
Target:  5'- cGAGCGCCuugacCGCGcGCUCCGcgcGCAgCCUg -3'
miRNA:   3'- uUUCGCGGu----GUGCaUGAGGC---UGU-GGA- -5'
6952 3' -55.1 NC_001875.2 + 38271 0.69 0.752108
Target:  5'- aAGAGCGCCucgcagcGCGCGUACgaCGACGCg- -3'
miRNA:   3'- -UUUCGCGG-------UGUGCAUGagGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 90383 0.69 0.772566
Target:  5'- ---aCGCCGCGCGcGCcgcaaCCGGCGCCUg -3'
miRNA:   3'- uuucGCGGUGUGCaUGa----GGCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 118453 0.68 0.782109
Target:  5'- --uGUGCUACGCGUGCUgCGucGCGCUg -3'
miRNA:   3'- uuuCGCGGUGUGCAUGAgGC--UGUGGa -5'
6952 3' -55.1 NC_001875.2 + 39267 0.68 0.79151
Target:  5'- --uGCGCgACGCGgggcgGCUucugcccgCCGACACCa -3'
miRNA:   3'- uuuCGCGgUGUGCa----UGA--------GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 113404 0.68 0.800761
Target:  5'- --cGCGCCACGCGga--CCG-CGCCUc -3'
miRNA:   3'- uuuCGCGGUGUGCaugaGGCuGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 32797 0.68 0.809851
Target:  5'- cGGGCGCCGCGcCGgcaaGCUCggcgaaCGGCGCCg -3'
miRNA:   3'- uUUCGCGGUGU-GCa---UGAG------GCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 57742 0.68 0.809851
Target:  5'- --cGCGCgGCGCGUAgUCgCGAaaCGCCUc -3'
miRNA:   3'- uuuCGCGgUGUGCAUgAG-GCU--GUGGA- -5'
6952 3' -55.1 NC_001875.2 + 38476 0.68 0.818771
Target:  5'- -uGGUGCaGCGCGUGCUC-GACACUc -3'
miRNA:   3'- uuUCGCGgUGUGCAUGAGgCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 116767 0.7 0.721039
Target:  5'- cAGGCGCUGCGCGUGCaaugaguugaugCCGggguACACCUg -3'
miRNA:   3'- uUUCGCGGUGUGCAUGa-----------GGC----UGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 98921 0.7 0.702626
Target:  5'- --cGCGCuCACGCaaGUGCUC-GACACCUu -3'
miRNA:   3'- uuuCGCG-GUGUG--CAUGAGgCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 40787 0.7 0.702626
Target:  5'- --cGUGCUGCGCGUGC-CCaGCACCa -3'
miRNA:   3'- uuuCGCGGUGUGCAUGaGGcUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 36981 0.77 0.344231
Target:  5'- --cGCGCCugGCGUACguggCCGAUAUCg -3'
miRNA:   3'- uuuCGCGGugUGCAUGa---GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 66040 0.73 0.546373
Target:  5'- -uGGCGCCGCGCaGgcaccGCgcgCCGACGCCg -3'
miRNA:   3'- uuUCGCGGUGUG-Ca----UGa--GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 66695 0.72 0.566951
Target:  5'- ---aUGCUGCACGUGaccgcCUCCGACACCa -3'
miRNA:   3'- uuucGCGGUGUGCAU-----GAGGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 111752 0.72 0.566951
Target:  5'- uGGGGCGCCcauCACGUGCgCCGACgACUg -3'
miRNA:   3'- -UUUCGCGGu--GUGCAUGaGGCUG-UGGa -5'
6952 3' -55.1 NC_001875.2 + 97884 0.71 0.638003
Target:  5'- --cGCGCCGCACGggcacguugcggGCgucggcgCCGACGCCc -3'
miRNA:   3'- uuuCGCGGUGUGCa-----------UGa------GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 129164 0.71 0.640102
Target:  5'- cGAGGCGCCGCA-GUugccccagGCgccgCCGGCGCCg -3'
miRNA:   3'- -UUUCGCGGUGUgCA--------UGa---GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 69104 0.71 0.650592
Target:  5'- --cGgGCCACACGUACauuacggCCGACAUUg -3'
miRNA:   3'- uuuCgCGGUGUGCAUGa------GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 92528 0.7 0.692306
Target:  5'- --cGCGCCcgGCGCGUuuuCUCUGcACACCa -3'
miRNA:   3'- uuuCGCGG--UGUGCAu--GAGGC-UGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.