miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6958 3' -57.2 NC_001875.2 + 66241 1.05 0.0027
Target:  5'- gGUGAGCGUUUCGCACUGCGCCGCCAAc -3'
miRNA:   3'- -CACUCGCAAAGCGUGACGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 58038 0.77 0.213409
Target:  5'- cGUGGGCGg--CGCGCUGCcguuccagccgccGCCGCCAc -3'
miRNA:   3'- -CACUCGCaaaGCGUGACG-------------CGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 110174 0.76 0.273729
Target:  5'- -cGGGCGgcgUCGCACUGCGCuCGuCCGc -3'
miRNA:   3'- caCUCGCaa-AGCGUGACGCG-GC-GGUu -5'
6958 3' -57.2 NC_001875.2 + 30936 0.75 0.308334
Target:  5'- -cGAGCGUcuccgCGCGCUGCGgCGCCc- -3'
miRNA:   3'- caCUCGCAaa---GCGUGACGCgGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 62418 0.73 0.413373
Target:  5'- cGUGGGCaagcgUUUGCGCUGCGCCGgCu- -3'
miRNA:   3'- -CACUCGca---AAGCGUGACGCGGCgGuu -5'
6958 3' -57.2 NC_001875.2 + 48295 0.72 0.431385
Target:  5'- aGUGGGCGUgUUUGCgACUGCGCgaCGCCu- -3'
miRNA:   3'- -CACUCGCA-AAGCG-UGACGCG--GCGGuu -5'
6958 3' -57.2 NC_001875.2 + 74097 0.72 0.45924
Target:  5'- --aGGCGUUUCGCgACUacGCGCCGCgCGAc -3'
miRNA:   3'- cacUCGCAAAGCG-UGA--CGCGGCG-GUU- -5'
6958 3' -57.2 NC_001875.2 + 12784 0.72 0.468737
Target:  5'- -gGGGCGccgCGCACaUGCGCaCGCCGGa -3'
miRNA:   3'- caCUCGCaaaGCGUG-ACGCG-GCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 97415 0.71 0.488025
Target:  5'- aUGGGCGUgaaUUUGCGCaacGCGCCGUCGu -3'
miRNA:   3'- cACUCGCA---AAGCGUGa--CGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 23178 0.71 0.488025
Target:  5'- --uAGCGUUUCGCAgUGCGCUaaGCCc- -3'
miRNA:   3'- cacUCGCAAAGCGUgACGCGG--CGGuu -5'
6958 3' -57.2 NC_001875.2 + 89294 0.7 0.537761
Target:  5'- gGUGuAGUGgc-CGCAUgGCGCCGCCAc -3'
miRNA:   3'- -CAC-UCGCaaaGCGUGaCGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 98741 0.69 0.589124
Target:  5'- cGUGGuGCGUgcucagcCGCGacgGCGCCGCCAu -3'
miRNA:   3'- -CACU-CGCAaa-----GCGUga-CGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 64352 0.69 0.5964
Target:  5'- cGUG-GCGUUUCGCAacugcgagagcaucCUGUGCCGgCGc -3'
miRNA:   3'- -CACuCGCAAAGCGU--------------GACGCGGCgGUu -5'
6958 3' -57.2 NC_001875.2 + 113681 0.69 0.599522
Target:  5'- aGUG-GCGgcgUCGCGC-GCGCCGCa-- -3'
miRNA:   3'- -CACuCGCaa-AGCGUGaCGCGGCGguu -5'
6958 3' -57.2 NC_001875.2 + 32791 0.69 0.609946
Target:  5'- cGUGGGCGg---GCGCcGCGCCGgCAAg -3'
miRNA:   3'- -CACUCGCaaagCGUGaCGCGGCgGUU- -5'
6958 3' -57.2 NC_001875.2 + 19344 0.69 0.609946
Target:  5'- cGUGGGCGUggugCGCGgaGCGuuGgCCGAc -3'
miRNA:   3'- -CACUCGCAaa--GCGUgaCGCggC-GGUU- -5'
6958 3' -57.2 NC_001875.2 + 26302 0.69 0.620387
Target:  5'- cGUGGGCGUcacgccaauUUCGCgACgagccGUGUCGCCAAg -3'
miRNA:   3'- -CACUCGCA---------AAGCG-UGa----CGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 36491 0.69 0.620387
Target:  5'- -cGAcGCGU---GCACgUGCGCCGCCGGu -3'
miRNA:   3'- caCU-CGCAaagCGUG-ACGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 100264 0.69 0.630837
Target:  5'- uGUGGGCGg--CGCGCaaggaaGCCGCCGGg -3'
miRNA:   3'- -CACUCGCaaaGCGUGacg---CGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 37104 0.69 0.630837
Target:  5'- cGUGGGUGUgcggGCGCgGCGCCGCg-- -3'
miRNA:   3'- -CACUCGCAaag-CGUGaCGCGGCGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.