miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6958 3' -57.2 NC_001875.2 + 1723 0.67 0.713732
Target:  5'- -cGGGCGcgacaccggUCGCGCcGcCGCCGCCGc -3'
miRNA:   3'- caCUCGCaa-------AGCGUGaC-GCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 3864 0.67 0.713732
Target:  5'- cGUGuGGCacggcaGCACcGCGCCGCCAAg -3'
miRNA:   3'- -CAC-UCGcaaag-CGUGaCGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 5001 0.66 0.773114
Target:  5'- cUGuGCGgcacuugUGCACuuUGCGCCGCCu- -3'
miRNA:   3'- cACuCGCaaa----GCGUG--ACGCGGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 6935 0.69 0.641288
Target:  5'- cGUGAGCaacgcgUCGUGCgUGCGCCGCg-- -3'
miRNA:   3'- -CACUCGcaa---AGCGUG-ACGCGGCGguu -5'
6958 3' -57.2 NC_001875.2 + 8511 0.66 0.81021
Target:  5'- uGUGGGCGccgCGCACUGCaaCGCg-- -3'
miRNA:   3'- -CACUCGCaaaGCGUGACGcgGCGguu -5'
6958 3' -57.2 NC_001875.2 + 11552 0.66 0.801166
Target:  5'- ---cGCcaaUUUCGUAC-GCGCCGCCGAa -3'
miRNA:   3'- cacuCGc--AAAGCGUGaCGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 11924 0.66 0.791962
Target:  5'- --aGGUGUUUUGCGCgcgGCG-CGCCGAc -3'
miRNA:   3'- cacUCGCAAAGCGUGa--CGCgGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 12150 0.68 0.651732
Target:  5'- -cGAGCGcaaccagcgcUUUcggcugaagcCGCugUGCGCCGCCGc -3'
miRNA:   3'- caCUCGC----------AAA----------GCGugACGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 12784 0.72 0.468737
Target:  5'- -gGGGCGccgCGCACaUGCGCaCGCCGGa -3'
miRNA:   3'- caCUCGCaaaGCGUG-ACGCG-GCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 17296 0.68 0.662159
Target:  5'- -gGAGCG--UCGUGa-GCGCCGCCGAu -3'
miRNA:   3'- caCUCGCaaAGCGUgaCGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 18451 0.66 0.782609
Target:  5'- ---cGCGUggCGCGCgaaucgcGCGCCGCUGAc -3'
miRNA:   3'- cacuCGCAaaGCGUGa------CGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 19344 0.69 0.609946
Target:  5'- cGUGGGCGUggugCGCGgaGCGuuGgCCGAc -3'
miRNA:   3'- -CACUCGCAaa--GCGUgaCGCggC-GGUU- -5'
6958 3' -57.2 NC_001875.2 + 22904 0.67 0.713732
Target:  5'- uUGGGCGgauuggUCGgGCaGCGCCGCUu- -3'
miRNA:   3'- cACUCGCaa----AGCgUGaCGCGGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 23178 0.71 0.488025
Target:  5'- --uAGCGUUUCGCAgUGCGCUaaGCCc- -3'
miRNA:   3'- cacUCGCAAAGCGUgACGCGG--CGGuu -5'
6958 3' -57.2 NC_001875.2 + 26302 0.69 0.620387
Target:  5'- cGUGGGCGUcacgccaauUUCGCgACgagccGUGUCGCCAAg -3'
miRNA:   3'- -CACUCGCA---------AAGCG-UGa----CGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 30936 0.75 0.308334
Target:  5'- -cGAGCGUcuccgCGCGCUGCGgCGCCc- -3'
miRNA:   3'- caCUCGCAaa---GCGUGACGCgGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 31685 0.67 0.743882
Target:  5'- cGUGccGGCGUggacCGcCGCUugcGCGCCGCCGg -3'
miRNA:   3'- -CAC--UCGCAaa--GC-GUGA---CGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 32002 0.68 0.687064
Target:  5'- uGUGAGCGgcggcgacgcagCGCACUGCGaaCUGCUGAu -3'
miRNA:   3'- -CACUCGCaaa---------GCGUGACGC--GGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 32791 0.69 0.609946
Target:  5'- cGUGGGCGg---GCGCcGCGCCGgCAAg -3'
miRNA:   3'- -CACUCGCaaagCGUGaCGCGGCgGUU- -5'
6958 3' -57.2 NC_001875.2 + 36491 0.69 0.620387
Target:  5'- -cGAcGCGU---GCACgUGCGCCGCCGGu -3'
miRNA:   3'- caCU-CGCAaagCGUG-ACGCGGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.