miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6958 3' -57.2 NC_001875.2 + 1723 0.67 0.713732
Target:  5'- -cGGGCGcgacaccggUCGCGCcGcCGCCGCCGc -3'
miRNA:   3'- caCUCGCaa-------AGCGUGaC-GCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 6935 0.69 0.641288
Target:  5'- cGUGAGCaacgcgUCGUGCgUGCGCCGCg-- -3'
miRNA:   3'- -CACUCGcaa---AGCGUG-ACGCGGCGguu -5'
6958 3' -57.2 NC_001875.2 + 69230 0.69 0.641288
Target:  5'- -cGGGCGacgCGCGCUGUGCCGacuugcCCGAc -3'
miRNA:   3'- caCUCGCaaaGCGUGACGCGGC------GGUU- -5'
6958 3' -57.2 NC_001875.2 + 58473 0.68 0.651732
Target:  5'- -cGAGU-UUUUGCGCUGUGUgGCCAAc -3'
miRNA:   3'- caCUCGcAAAGCGUGACGCGgCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 80283 0.68 0.651732
Target:  5'- cGUGAaCGgcUCGCACUugacgaGCGCCGUCGc -3'
miRNA:   3'- -CACUcGCaaAGCGUGA------CGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 12150 0.68 0.651732
Target:  5'- -cGAGCGcaaccagcgcUUUcggcugaagcCGCugUGCGCCGCCGc -3'
miRNA:   3'- caCUCGC----------AAA----------GCGugACGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 17296 0.68 0.662159
Target:  5'- -gGAGCG--UCGUGa-GCGCCGCCGAu -3'
miRNA:   3'- caCUCGCaaAGCGUgaCGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 32002 0.68 0.687064
Target:  5'- uGUGAGCGgcggcgacgcagCGCACUGCGaaCUGCUGAu -3'
miRNA:   3'- -CACUCGCaaa---------GCGUGACGC--GGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 108574 0.67 0.713732
Target:  5'- --cGGCGgugcUgGCGCUGCGCUGCCc- -3'
miRNA:   3'- cacUCGCaa--AgCGUGACGCGGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 37104 0.69 0.630837
Target:  5'- cGUGGGUGUgcggGCGCgGCGCCGCg-- -3'
miRNA:   3'- -CACUCGCAaag-CGUGaCGCGGCGguu -5'
6958 3' -57.2 NC_001875.2 + 100264 0.69 0.630837
Target:  5'- uGUGGGCGg--CGCGCaaggaaGCCGCCGGg -3'
miRNA:   3'- -CACUCGCaaaGCGUGacg---CGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 26302 0.69 0.620387
Target:  5'- cGUGGGCGUcacgccaauUUCGCgACgagccGUGUCGCCAAg -3'
miRNA:   3'- -CACUCGCA---------AAGCG-UGa----CGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 58038 0.77 0.213409
Target:  5'- cGUGGGCGg--CGCGCUGCcguuccagccgccGCCGCCAc -3'
miRNA:   3'- -CACUCGCaaaGCGUGACG-------------CGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 110174 0.76 0.273729
Target:  5'- -cGGGCGgcgUCGCACUGCGCuCGuCCGc -3'
miRNA:   3'- caCUCGCaa-AGCGUGACGCG-GC-GGUu -5'
6958 3' -57.2 NC_001875.2 + 62418 0.73 0.413373
Target:  5'- cGUGGGCaagcgUUUGCGCUGCGCCGgCu- -3'
miRNA:   3'- -CACUCGca---AAGCGUGACGCGGCgGuu -5'
6958 3' -57.2 NC_001875.2 + 23178 0.71 0.488025
Target:  5'- --uAGCGUUUCGCAgUGCGCUaaGCCc- -3'
miRNA:   3'- cacUCGCAAAGCGUgACGCGG--CGGuu -5'
6958 3' -57.2 NC_001875.2 + 89294 0.7 0.537761
Target:  5'- gGUGuAGUGgc-CGCAUgGCGCCGCCAc -3'
miRNA:   3'- -CAC-UCGCaaaGCGUGaCGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 98741 0.69 0.589124
Target:  5'- cGUGGuGCGUgcucagcCGCGacgGCGCCGCCAu -3'
miRNA:   3'- -CACU-CGCAaa-----GCGUga-CGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 19344 0.69 0.609946
Target:  5'- cGUGGGCGUggugCGCGgaGCGuuGgCCGAc -3'
miRNA:   3'- -CACUCGCAaa--GCGUgaCGCggC-GGUU- -5'
6958 3' -57.2 NC_001875.2 + 32791 0.69 0.609946
Target:  5'- cGUGGGCGg---GCGCcGCGCCGgCAAg -3'
miRNA:   3'- -CACUCGCaaagCGUGaCGCGGCgGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.