miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 3' -55.2 NC_001875.2 + 74222 1.07 0.003485
Target:  5'- gACCAUCACAACAUCGCGCCGUGCCUGc -3'
miRNA:   3'- -UGGUAGUGUUGUAGCGCGGCACGGAC- -5'
6967 3' -55.2 NC_001875.2 + 39072 0.8 0.224372
Target:  5'- gGCCAUugugcgcCGCGGCGUCGUGCUGUGCCa- -3'
miRNA:   3'- -UGGUA-------GUGUUGUAGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 41114 0.76 0.378778
Target:  5'- cACCGUCGC-ACGUCGUGUCGcGCUUGa -3'
miRNA:   3'- -UGGUAGUGuUGUAGCGCGGCaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 57576 0.74 0.488025
Target:  5'- aACCggCGCGGCGUCGCGCUGU-CCa- -3'
miRNA:   3'- -UGGuaGUGUUGUAGCGCGGCAcGGac -5'
6967 3' -55.2 NC_001875.2 + 61894 0.73 0.53776
Target:  5'- cGCCGUgGCccGACA-CGCGCCGUGUCa- -3'
miRNA:   3'- -UGGUAgUG--UUGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 44531 0.72 0.609946
Target:  5'- uUCGUUcacaGCAGCGUCGCGCggCGUGCCg- -3'
miRNA:   3'- uGGUAG----UGUUGUAGCGCG--GCACGGac -5'
6967 3' -55.2 NC_001875.2 + 38057 0.71 0.662159
Target:  5'- cGCCcgCGCGAC-UUGCGCCGUaaacgGCUUGu -3'
miRNA:   3'- -UGGuaGUGUUGuAGCGCGGCA-----CGGAC- -5'
6967 3' -55.2 NC_001875.2 + 65784 0.7 0.682928
Target:  5'- aGCaCGcgCGCGGCGUcggCGCGCgGUGCCUGc -3'
miRNA:   3'- -UG-GUa-GUGUUGUA---GCGCGgCACGGAC- -5'
6967 3' -55.2 NC_001875.2 + 28515 0.7 0.682928
Target:  5'- aGCCGUCGCGcacGCGUCGC-CCGgcacGCCg- -3'
miRNA:   3'- -UGGUAGUGU---UGUAGCGcGGCa---CGGac -5'
6967 3' -55.2 NC_001875.2 + 69214 0.69 0.743882
Target:  5'- gGCCAguacgcuuguUCggGCGACG-CGCGCUGUGCCg- -3'
miRNA:   3'- -UGGU----------AG--UGUUGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 22834 0.69 0.743882
Target:  5'- cACCGUCggcggcACGACGUaCGCGUCcaGCCUGg -3'
miRNA:   3'- -UGGUAG------UGUUGUA-GCGCGGcaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 11773 0.69 0.753741
Target:  5'- gUCAUCGCcAACcUCGCGgCGcGCCUGa -3'
miRNA:   3'- uGGUAGUG-UUGuAGCGCgGCaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 101093 0.69 0.753741
Target:  5'- aGCUAUacaGCGACAgCGUGCaCGUGCCa- -3'
miRNA:   3'- -UGGUAg--UGUUGUaGCGCG-GCACGGac -5'
6967 3' -55.2 NC_001875.2 + 16253 0.69 0.763488
Target:  5'- gGCCGUCACGcgcguGCGUCaCGUgGUGCCc- -3'
miRNA:   3'- -UGGUAGUGU-----UGUAGcGCGgCACGGac -5'
6967 3' -55.2 NC_001875.2 + 14504 0.69 0.763488
Target:  5'- cGCCGguUCGCccGCGcCGCGCCGUGUCa- -3'
miRNA:   3'- -UGGU--AGUGu-UGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 7359 0.69 0.773114
Target:  5'- aACCAUCAUgugUAUCGaGCCGUacaGCCUGg -3'
miRNA:   3'- -UGGUAGUGuu-GUAGCgCGGCA---CGGAC- -5'
6967 3' -55.2 NC_001875.2 + 20023 0.69 0.773114
Target:  5'- aGCCGUCACGcggaGCAgccagGCGCCGUcgGCCg- -3'
miRNA:   3'- -UGGUAGUGU----UGUag---CGCGGCA--CGGac -5'
6967 3' -55.2 NC_001875.2 + 51572 0.69 0.773114
Target:  5'- aGCCGuUCACGACG-CGCGgCGUGgCCa- -3'
miRNA:   3'- -UGGU-AGUGUUGUaGCGCgGCAC-GGac -5'
6967 3' -55.2 NC_001875.2 + 1147 0.69 0.782609
Target:  5'- gGCCGUgGCAaaagugggGCcgCGUGCCGUGCa-- -3'
miRNA:   3'- -UGGUAgUGU--------UGuaGCGCGGCACGgac -5'
6967 3' -55.2 NC_001875.2 + 68569 0.68 0.791962
Target:  5'- gGCgGUCGCGcaccGCGUgGCGCCGcugGCCg- -3'
miRNA:   3'- -UGgUAGUGU----UGUAgCGCGGCa--CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.