miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 3' -55.2 NC_001875.2 + 1147 0.69 0.782609
Target:  5'- gGCCGUgGCAaaagugggGCcgCGUGCCGUGCa-- -3'
miRNA:   3'- -UGGUAgUGU--------UGuaGCGCGGCACGgac -5'
6967 3' -55.2 NC_001875.2 + 1709 0.66 0.894163
Target:  5'- gGCCAcaaaugcugcgggCGCGACAccggUCGCGCCGccGCCg- -3'
miRNA:   3'- -UGGUa------------GUGUUGU----AGCGCGGCa-CGGac -5'
6967 3' -55.2 NC_001875.2 + 2275 0.67 0.868336
Target:  5'- gGCCAUguUGACGUcgugaugcgcgCGCGCCGUGgCCg- -3'
miRNA:   3'- -UGGUAguGUUGUA-----------GCGCGGCAC-GGac -5'
6967 3' -55.2 NC_001875.2 + 6923 0.67 0.85193
Target:  5'- gACCAaCACGuacgugaGCAaCGCGUCGUGCgUGc -3'
miRNA:   3'- -UGGUaGUGU-------UGUaGCGCGGCACGgAC- -5'
6967 3' -55.2 NC_001875.2 + 7359 0.69 0.773114
Target:  5'- aACCAUCAUgugUAUCGaGCCGUacaGCCUGg -3'
miRNA:   3'- -UGGUAGUGuu-GUAGCgCGGCA---CGGAC- -5'
6967 3' -55.2 NC_001875.2 + 11192 0.67 0.875072
Target:  5'- cGCCGUuguggagCACGACGcCGCGCCGgacgagaagGCCg- -3'
miRNA:   3'- -UGGUA-------GUGUUGUaGCGCGGCa--------CGGac -5'
6967 3' -55.2 NC_001875.2 + 11773 0.69 0.753741
Target:  5'- gUCAUCGCcAACcUCGCGgCGcGCCUGa -3'
miRNA:   3'- uGGUAGUG-UUGuAGCGCgGCaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 13899 0.67 0.860642
Target:  5'- aACCAaaCGCGGCggCGCGCaCGccgGCCUGc -3'
miRNA:   3'- -UGGUa-GUGUUGuaGCGCG-GCa--CGGAC- -5'
6967 3' -55.2 NC_001875.2 + 14504 0.69 0.763488
Target:  5'- cGCCGguUCGCccGCGcCGCGCCGUGUCa- -3'
miRNA:   3'- -UGGU--AGUGu-UGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 16253 0.69 0.763488
Target:  5'- gGCCGUCACGcgcguGCGUCaCGUgGUGCCc- -3'
miRNA:   3'- -UGGUAGUGU-----UGUAGcGCGgCACGGac -5'
6967 3' -55.2 NC_001875.2 + 17813 0.66 0.883054
Target:  5'- uACCAUCugGACcgCGCGgCCGccaUGCg-- -3'
miRNA:   3'- -UGGUAGugUUGuaGCGC-GGC---ACGgac -5'
6967 3' -55.2 NC_001875.2 + 18679 0.67 0.868336
Target:  5'- uGCCAUaucaaACGGCGcgCGCGCCG-GCgUGc -3'
miRNA:   3'- -UGGUAg----UGUUGUa-GCGCGGCaCGgAC- -5'
6967 3' -55.2 NC_001875.2 + 20023 0.69 0.773114
Target:  5'- aGCCGUCACGcggaGCAgccagGCGCCGUcgGCCg- -3'
miRNA:   3'- -UGGUAGUGU----UGUag---CGCGGCA--CGGac -5'
6967 3' -55.2 NC_001875.2 + 20723 0.68 0.791962
Target:  5'- cGCCGUgAC-GCAUUGCuGCCGUGCa-- -3'
miRNA:   3'- -UGGUAgUGuUGUAGCG-CGGCACGgac -5'
6967 3' -55.2 NC_001875.2 + 22834 0.69 0.743882
Target:  5'- cACCGUCggcggcACGACGUaCGCGUCcaGCCUGg -3'
miRNA:   3'- -UGGUAG------UGUUGUA-GCGCGGcaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 23810 0.67 0.860642
Target:  5'- cGCUc-CGCGGCGUcgggCGCGCCGUGUCUc -3'
miRNA:   3'- -UGGuaGUGUUGUA----GCGCGGCACGGAc -5'
6967 3' -55.2 NC_001875.2 + 28515 0.7 0.682928
Target:  5'- aGCCGUCGCGcacGCGUCGC-CCGgcacGCCg- -3'
miRNA:   3'- -UGGUAGUGU---UGUAGCGcGGCa---CGGac -5'
6967 3' -55.2 NC_001875.2 + 29119 0.66 0.890068
Target:  5'- cGCCGUCGCAGCAaaagcacCGCGUCuUGUCg- -3'
miRNA:   3'- -UGGUAGUGUUGUa------GCGCGGcACGGac -5'
6967 3' -55.2 NC_001875.2 + 30956 0.66 0.909675
Target:  5'- cGCCAUgGCGcccACGcgCGCGCUGcGCCUc -3'
miRNA:   3'- -UGGUAgUGU---UGUa-GCGCGGCaCGGAc -5'
6967 3' -55.2 NC_001875.2 + 37503 0.66 0.890068
Target:  5'- gGCCG--GCGACGgugcggacgaCGCGCCcUGCCUGg -3'
miRNA:   3'- -UGGUagUGUUGUa---------GCGCGGcACGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.