miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 3' -55.2 NC_001875.2 + 1709 0.66 0.894163
Target:  5'- gGCCAcaaaugcugcgggCGCGACAccggUCGCGCCGccGCCg- -3'
miRNA:   3'- -UGGUa------------GUGUUGU----AGCGCGGCa-CGGac -5'
6967 3' -55.2 NC_001875.2 + 130913 0.67 0.852732
Target:  5'- aGCCguccgGUCACGGCAguggcggcgguUUGCGCCGUGUguUUGg -3'
miRNA:   3'- -UGG-----UAGUGUUGU-----------AGCGCGGCACG--GAC- -5'
6967 3' -55.2 NC_001875.2 + 23810 0.67 0.860642
Target:  5'- cGCUc-CGCGGCGUcgggCGCGCCGUGUCUc -3'
miRNA:   3'- -UGGuaGUGUUGUA----GCGCGGCACGGAc -5'
6967 3' -55.2 NC_001875.2 + 42048 0.67 0.860642
Target:  5'- cGCCcgCGCuGCGuUCGCGCaCGUGCa-- -3'
miRNA:   3'- -UGGuaGUGuUGU-AGCGCG-GCACGgac -5'
6967 3' -55.2 NC_001875.2 + 18679 0.67 0.868336
Target:  5'- uGCCAUaucaaACGGCGcgCGCGCCG-GCgUGc -3'
miRNA:   3'- -UGGUAg----UGUUGUa-GCGCGGCaCGgAC- -5'
6967 3' -55.2 NC_001875.2 + 11192 0.67 0.875072
Target:  5'- cGCCGUuguggagCACGACGcCGCGCCGgacgagaagGCCg- -3'
miRNA:   3'- -UGGUA-------GUGUUGUaGCGCGGCa--------CGGac -5'
6967 3' -55.2 NC_001875.2 + 29119 0.66 0.890068
Target:  5'- cGCCGUCGCAGCAaaagcacCGCGUCuUGUCg- -3'
miRNA:   3'- -UGGUAGUGUUGUa------GCGCGGcACGGac -5'
6967 3' -55.2 NC_001875.2 + 51425 0.66 0.890068
Target:  5'- uCCA--ACGACGaguuUCGUGCCGUGCUa- -3'
miRNA:   3'- uGGUagUGUUGU----AGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 37503 0.66 0.890068
Target:  5'- gGCCG--GCGACGgugcggacgaCGCGCCcUGCCUGg -3'
miRNA:   3'- -UGGUagUGUUGUa---------GCGCGGcACGGAC- -5'
6967 3' -55.2 NC_001875.2 + 6923 0.67 0.85193
Target:  5'- gACCAaCACGuacgugaGCAaCGCGUCGUGCgUGc -3'
miRNA:   3'- -UGGUaGUGU-------UGUaGCGCGGCACGgAC- -5'
6967 3' -55.2 NC_001875.2 + 102003 0.67 0.844615
Target:  5'- uGCCGggCACGGggcCGUCG-GCCGUGCCc- -3'
miRNA:   3'- -UGGUa-GUGUU---GUAGCgCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 100223 0.67 0.844615
Target:  5'- gGCCGugguUCugAGCAUCGCGUaccUGCUUGu -3'
miRNA:   3'- -UGGU----AGugUUGUAGCGCGgc-ACGGAC- -5'
6967 3' -55.2 NC_001875.2 + 39072 0.8 0.224372
Target:  5'- gGCCAUugugcgcCGCGGCGUCGUGCUGUGCCa- -3'
miRNA:   3'- -UGGUA-------GUGUUGUAGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 61894 0.73 0.53776
Target:  5'- cGCCGUgGCccGACA-CGCGCCGUGUCa- -3'
miRNA:   3'- -UGGUAgUG--UUGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 69214 0.69 0.743882
Target:  5'- gGCCAguacgcuuguUCggGCGACG-CGCGCUGUGCCg- -3'
miRNA:   3'- -UGGU----------AG--UGUUGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 22834 0.69 0.743882
Target:  5'- cACCGUCggcggcACGACGUaCGCGUCcaGCCUGg -3'
miRNA:   3'- -UGGUAG------UGUUGUA-GCGCGGcaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 11773 0.69 0.753741
Target:  5'- gUCAUCGCcAACcUCGCGgCGcGCCUGa -3'
miRNA:   3'- uGGUAGUG-UUGuAGCGCgGCaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 16253 0.69 0.763488
Target:  5'- gGCCGUCACGcgcguGCGUCaCGUgGUGCCc- -3'
miRNA:   3'- -UGGUAGUGU-----UGUAGcGCGgCACGGac -5'
6967 3' -55.2 NC_001875.2 + 68569 0.68 0.791962
Target:  5'- gGCgGUCGCGcaccGCGUgGCGCCGcugGCCg- -3'
miRNA:   3'- -UGgUAGUGU----UGUAgCGCGGCa--CGGac -5'
6967 3' -55.2 NC_001875.2 + 50781 0.68 0.819085
Target:  5'- cUCGUCGCGGCGcaccaUUaCGCCGUGCUUGc -3'
miRNA:   3'- uGGUAGUGUUGU-----AGcGCGGCACGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.