miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 5' -61.8 NC_001875.2 + 74261 1.07 0.001083
Target:  5'- cUUCUGGACAGCGCGACGCCGCGCCGGu -3'
miRNA:   3'- -AAGACCUGUCGCGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 37105 0.82 0.068871
Target:  5'- --gUGGguguGCgGGCGCGGCGCCGCGCCGGc -3'
miRNA:   3'- aagACC----UG-UCGCGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 3045 0.81 0.080282
Target:  5'- -gUUGGGCAGCGCGuaagaggcgcgcaGCGgCGCGCCGGg -3'
miRNA:   3'- aaGACCUGUCGCGC-------------UGCgGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 98681 0.79 0.096414
Target:  5'- cUCgagcGGCAGCGCGACGCCGUGCUGu -3'
miRNA:   3'- aAGac--CUGUCGCGCUGCGGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 90029 0.78 0.121281
Target:  5'- -aCUGGccGCGGCGcCGGCGCgCGUGCCGGc -3'
miRNA:   3'- aaGACC--UGUCGC-GCUGCG-GCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 17817 0.76 0.15973
Target:  5'- aUCUGGACcGCGCGGcCGCCaugcgcgaggGCGCCGa -3'
miRNA:   3'- aAGACCUGuCGCGCU-GCGG----------CGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 11196 0.76 0.163725
Target:  5'- gUUgUGGA--GCaCGACGCCGCGCCGGa -3'
miRNA:   3'- -AAgACCUguCGcGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 37578 0.76 0.176253
Target:  5'- --gUGGAugcgcCGGCGCGAgCGCCGCGgCCGGc -3'
miRNA:   3'- aagACCU-----GUCGCGCU-GCGGCGC-GGCC- -5'
6967 5' -61.8 NC_001875.2 + 94254 0.75 0.180616
Target:  5'- ---cGGcCGGcCGCGGCGCuCGCGCCGGc -3'
miRNA:   3'- aagaCCuGUC-GCGCUGCG-GCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 32782 0.75 0.185073
Target:  5'- cUCgcgcgGcGugGGCG-GGCGCCGCGCCGGc -3'
miRNA:   3'- aAGa----C-CugUCGCgCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 94716 0.75 0.189168
Target:  5'- ---cGGAaagacgcaaacgcCGGCGCGGCGCCGCGCCc- -3'
miRNA:   3'- aagaCCU-------------GUCGCGCUGCGGCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 74101 0.75 0.189628
Target:  5'- -gUUGGGCA--GCGACGCCGUGCUGGc -3'
miRNA:   3'- aaGACCUGUcgCGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 18156 0.75 0.199032
Target:  5'- -aCUGGugcgGCGcGCGCGACGCCGCcacuguggcgguGCCGGc -3'
miRNA:   3'- aaGACC----UGU-CGCGCUGCGGCG------------CGGCC- -5'
6967 5' -61.8 NC_001875.2 + 57689 0.75 0.203886
Target:  5'- -gCUGGcgGCGGCG-GGCGCCGCGCCc- -3'
miRNA:   3'- aaGACC--UGUCGCgCUGCGGCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 3129 0.74 0.210852
Target:  5'- -cCUGGGCGGCGaagcccgcugcgcgGACGCgGCGUCGGg -3'
miRNA:   3'- aaGACCUGUCGCg-------------CUGCGgCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 95303 0.74 0.229711
Target:  5'- ---gGGACGGUGCG-CGCCaGCGCCGu -3'
miRNA:   3'- aagaCCUGUCGCGCuGCGG-CGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 62419 0.74 0.235197
Target:  5'- --gUGGGCaAGCGUuuGCGCUGCGCCGGc -3'
miRNA:   3'- aagACCUG-UCGCGc-UGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 10861 0.74 0.235197
Target:  5'- --gUGGACGaCGCgGugGCCGCGUCGGu -3'
miRNA:   3'- aagACCUGUcGCG-CugCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 107560 0.73 0.240792
Target:  5'- --aUGGACaAGCGCGGCGCCGuCGCa-- -3'
miRNA:   3'- aagACCUG-UCGCGCUGCGGC-GCGgcc -5'
6967 5' -61.8 NC_001875.2 + 40455 0.73 0.269826
Target:  5'- --gUGGGCAGCcccgaggGCGugGUgGUGCCGGg -3'
miRNA:   3'- aagACCUGUCG-------CGCugCGgCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.