miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 5' -61.8 NC_001875.2 + 79128 0.71 0.361099
Target:  5'- ----cGGCGGCG-GGCGCCGCGgCGGg -3'
miRNA:   3'- aagacCUGUCGCgCUGCGGCGCgGCC- -5'
6967 5' -61.8 NC_001875.2 + 111859 0.73 0.272942
Target:  5'- gUCUGGccacgcacgucagcaACGGCGaGGCGCCG-GCCGGa -3'
miRNA:   3'- aAGACC---------------UGUCGCgCUGCGGCgCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 29257 0.72 0.276719
Target:  5'- -aCUGcGGguGCGCGGCcgccgaCCGCGCCGGc -3'
miRNA:   3'- aaGAC-CUguCGCGCUGc-----GGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 68537 0.72 0.276719
Target:  5'- uUUCUGGAgCAGCGguuUGcCGCCGCGgCGGc -3'
miRNA:   3'- -AAGACCU-GUCGC---GCuGCGGCGCgGCC- -5'
6967 5' -61.8 NC_001875.2 + 41700 0.72 0.296232
Target:  5'- -cCUGGGCcagggcguauGCGCGGCGCUGCGCgGc -3'
miRNA:   3'- aaGACCUGu---------CGCGCUGCGGCGCGgCc -5'
6967 5' -61.8 NC_001875.2 + 74140 0.71 0.338423
Target:  5'- -gCUGGAguucgagGGCGCGGCGCC-CGCCGc -3'
miRNA:   3'- aaGACCUg------UCGCGCUGCGGcGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 92797 0.71 0.338423
Target:  5'- aUC-GGGCAGCuuacaGCGAacgUGCCGCGCCGcGg -3'
miRNA:   3'- aAGaCCUGUCG-----CGCU---GCGGCGCGGC-C- -5'
6967 5' -61.8 NC_001875.2 + 98801 0.71 0.338423
Target:  5'- aUCgc-GCGGCGCGGCGCC-CGCCGc -3'
miRNA:   3'- aAGaccUGUCGCGCUGCGGcGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 71134 0.71 0.345865
Target:  5'- -gCUGGGCGGCcucaGCG-CgGCCGCGuuGGg -3'
miRNA:   3'- aaGACCUGUCG----CGCuG-CGGCGCggCC- -5'
6967 5' -61.8 NC_001875.2 + 40455 0.73 0.269826
Target:  5'- --gUGGGCAGCcccgaggGCGugGUgGUGCCGGg -3'
miRNA:   3'- aagACCUGUCG-------CGCugCGgCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 107560 0.73 0.240792
Target:  5'- --aUGGACaAGCGCGGCGCCGuCGCa-- -3'
miRNA:   3'- aagACCUG-UCGCGCUGCGGC-GCGgcc -5'
6967 5' -61.8 NC_001875.2 + 62419 0.74 0.235197
Target:  5'- --gUGGGCaAGCGUuuGCGCUGCGCCGGc -3'
miRNA:   3'- aagACCUG-UCGCGc-UGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 37105 0.82 0.068871
Target:  5'- --gUGGguguGCgGGCGCGGCGCCGCGCCGGc -3'
miRNA:   3'- aagACC----UG-UCGCGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 11196 0.76 0.163725
Target:  5'- gUUgUGGA--GCaCGACGCCGCGCCGGa -3'
miRNA:   3'- -AAgACCUguCGcGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 37578 0.76 0.176253
Target:  5'- --gUGGAugcgcCGGCGCGAgCGCCGCGgCCGGc -3'
miRNA:   3'- aagACCU-----GUCGCGCU-GCGGCGC-GGCC- -5'
6967 5' -61.8 NC_001875.2 + 32782 0.75 0.185073
Target:  5'- cUCgcgcgGcGugGGCG-GGCGCCGCGCCGGc -3'
miRNA:   3'- aAGa----C-CugUCGCgCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 74101 0.75 0.189628
Target:  5'- -gUUGGGCA--GCGACGCCGUGCUGGc -3'
miRNA:   3'- aaGACCUGUcgCGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 18156 0.75 0.199032
Target:  5'- -aCUGGugcgGCGcGCGCGACGCCGCcacuguggcgguGCCGGc -3'
miRNA:   3'- aaGACC----UGU-CGCGCUGCGGCG------------CGGCC- -5'
6967 5' -61.8 NC_001875.2 + 95303 0.74 0.229711
Target:  5'- ---gGGACGGUGCG-CGCCaGCGCCGu -3'
miRNA:   3'- aagaCCUGUCGCGCuGCGG-CGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 10861 0.74 0.235197
Target:  5'- --gUGGACGaCGCgGugGCCGCGUCGGu -3'
miRNA:   3'- aagACCUGUcGCG-CugCGGCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.