miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 5' -61.8 NC_001875.2 + 1702 0.68 0.469961
Target:  5'- cUUCUGuGGCcacaaaugcugcgGGCGCGACaccgGUCGCGCCGc -3'
miRNA:   3'- -AAGAC-CUG-------------UCGCGCUG----CGGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 3045 0.81 0.080282
Target:  5'- -gUUGGGCAGCGCGuaagaggcgcgcaGCGgCGCGCCGGg -3'
miRNA:   3'- aaGACCUGUCGCGC-------------UGCgGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 3129 0.74 0.210852
Target:  5'- -cCUGGGCGGCGaagcccgcugcgcgGACGCgGCGUCGGg -3'
miRNA:   3'- aaGACCUGUCGCg-------------CUGCGgCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 7011 0.69 0.434351
Target:  5'- -gCUGGccgGCGGCGCGuaucugaccuuuaGCGCCGCcacGCUGGu -3'
miRNA:   3'- aaGACC---UGUCGCGC-------------UGCGGCG---CGGCC- -5'
6967 5' -61.8 NC_001875.2 + 7024 0.68 0.507944
Target:  5'- -gCUGGACguaAGCGagGugGCCGCGCg-- -3'
miRNA:   3'- aaGACCUG---UCGCg-CugCGGCGCGgcc -5'
6967 5' -61.8 NC_001875.2 + 8245 0.66 0.624957
Target:  5'- uUUUUGGGCAGCcgGCGAaucuugUGCC-CGCCGu -3'
miRNA:   3'- -AAGACCUGUCG--CGCU------GCGGcGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 9038 0.66 0.595201
Target:  5'- gUUUGGAgccgcCGGcCGCGcCGguuuCCGCGCCGGu -3'
miRNA:   3'- aAGACCU-----GUC-GCGCuGC----GGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 9357 0.67 0.564695
Target:  5'- aUUCuUGGGCAucgcaaaggugcuGCGCG-CGCCGCaGCCa- -3'
miRNA:   3'- -AAG-ACCUGU-------------CGCGCuGCGGCG-CGGcc -5'
6967 5' -61.8 NC_001875.2 + 9791 0.66 0.595201
Target:  5'- aUCcGGGCAcuGCGCGugcacaguaACGuuGgGCCGGa -3'
miRNA:   3'- aAGaCCUGU--CGCGC---------UGCggCgCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 10437 0.69 0.447524
Target:  5'- aUUUGGcgcagcagcuuugacGCGGCGCGGCGgCGCGCUc- -3'
miRNA:   3'- aAGACC---------------UGUCGCGCUGCgGCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 10861 0.74 0.235197
Target:  5'- --gUGGACGaCGCgGugGCCGCGUCGGu -3'
miRNA:   3'- aagACCUGUcGCG-CugCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 11196 0.76 0.163725
Target:  5'- gUUgUGGA--GCaCGACGCCGCGCCGGa -3'
miRNA:   3'- -AAgACCUguCGcGCUGCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 17484 0.66 0.634895
Target:  5'- --aUGGcCAGCaaguugGCgGACGCCGCGUCGu -3'
miRNA:   3'- aagACCuGUCG------CG-CUGCGGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 17817 0.76 0.15973
Target:  5'- aUCUGGACcGCGCGGcCGCCaugcgcgaggGCGCCGa -3'
miRNA:   3'- aAGACCUGuCGCGCU-GCGG----------CGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 18156 0.75 0.199032
Target:  5'- -aCUGGugcgGCGcGCGCGACGCCGCcacuguggcgguGCCGGc -3'
miRNA:   3'- aaGACC----UGU-CGCGCUGCGGCG------------CGGCC- -5'
6967 5' -61.8 NC_001875.2 + 18267 0.67 0.565673
Target:  5'- -gCUGGcccaAUGGCGCGccgugcGCGaCCGCGCCGu -3'
miRNA:   3'- aaGACC----UGUCGCGC------UGC-GGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 19950 0.68 0.470871
Target:  5'- ---cGGcCGGCGCGACGguCCG-GCCGGc -3'
miRNA:   3'- aagaCCuGUCGCGCUGC--GGCgCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 20264 0.69 0.465427
Target:  5'- --aUGGACAGCuGCggaaacacgacgcuuGugGCCaCGCCGGg -3'
miRNA:   3'- aagACCUGUCG-CG---------------CugCGGcGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 21072 0.67 0.535577
Target:  5'- gUUUUGGGCAaaagacGCGCGGCggcggucGCCGCGCUu- -3'
miRNA:   3'- -AAGACCUGU------CGCGCUG-------CGGCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 21665 0.7 0.401185
Target:  5'- ---cGGacgagcGCAGUGCGACGCCGC-CCGa -3'
miRNA:   3'- aagaCC------UGUCGCGCUGCGGCGcGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.