miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6968 5' -58.6 NC_001875.2 + 92205 0.66 0.715245
Target:  5'- cGCaaACGCCGCCaccgucgacUGCcgGGGCcGGCCgCu -3'
miRNA:   3'- aCG--UGCGGCGG---------ACGuaUUCG-UCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 76900 0.66 0.764143
Target:  5'- cGCGCGCaaaggggcggCGCCcaGCGacgacgaGAGCGGCUCCa -3'
miRNA:   3'- aCGUGCG----------GCGGa-CGUa------UUCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 126845 0.66 0.754563
Target:  5'- gUGCACaaguGCCGCaCaGCAgcgAGGCGGCUUUg -3'
miRNA:   3'- -ACGUG----CGGCG-GaCGUa--UUCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 7550 0.66 0.754563
Target:  5'- cGCaACGaccugaCGCCgGCGgacGAGCGGCaCCCc -3'
miRNA:   3'- aCG-UGCg-----GCGGaCGUa--UUCGUCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 108749 0.66 0.744874
Target:  5'- gGCGCGCCagagcgaCCUGguCGUGAaCAGCCUCa -3'
miRNA:   3'- aCGUGCGGc------GGAC--GUAUUcGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 9927 0.66 0.725205
Target:  5'- cGCGgGCCGCaaGUAUucuAGCGGUgcugCCCa -3'
miRNA:   3'- aCGUgCGGCGgaCGUAu--UCGUCG----GGG- -5'
6968 5' -58.6 NC_001875.2 + 91503 0.66 0.715245
Target:  5'- uUGCAaaCCGgCUGCAUuucgAGCCCCg -3'
miRNA:   3'- -ACGUgcGGCgGACGUAuucgUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 95989 0.66 0.725205
Target:  5'- aGCGCGCCGugcaguacCCUGCAaaa--GGCCaCCa -3'
miRNA:   3'- aCGUGCGGC--------GGACGUauucgUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 39957 0.66 0.715245
Target:  5'- uUGCccgaccCGCCGCC-GCAccAGCAggcGCCCUg -3'
miRNA:   3'- -ACGu-----GCGGCGGaCGUauUCGU---CGGGG- -5'
6968 5' -58.6 NC_001875.2 + 111902 0.66 0.740969
Target:  5'- gUGCGCGCCgGCCgcuccguguacggGCcgGuGCAGCUgCCg -3'
miRNA:   3'- -ACGUGCGG-CGGa------------CGuaUuCGUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 87989 0.66 0.754563
Target:  5'- cGUACGCgaCGCCcGCGc-AGCAGCCaagCCa -3'
miRNA:   3'- aCGUGCG--GCGGaCGUauUCGUCGG---GG- -5'
6968 5' -58.6 NC_001875.2 + 55353 0.66 0.735084
Target:  5'- gGgGCGCCGCCUcgucGuCGUccGCGGCCg- -3'
miRNA:   3'- aCgUGCGGCGGA----C-GUAuuCGUCGGgg -5'
6968 5' -58.6 NC_001875.2 + 18483 0.66 0.735084
Target:  5'- cGcCGCGCCGCa-GCGac-GCAGCCgCg -3'
miRNA:   3'- aC-GUGCGGCGgaCGUauuCGUCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 9309 0.66 0.735084
Target:  5'- cUGCGCGCCGgaCgcaaucgGCG-AAGCuGCCCg -3'
miRNA:   3'- -ACGUGCGGCg-Ga------CGUaUUCGuCGGGg -5'
6968 5' -58.6 NC_001875.2 + 4528 0.66 0.725205
Target:  5'- gGCGCaCCGCCgGCu---GCGGUUCCu -3'
miRNA:   3'- aCGUGcGGCGGaCGuauuCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 82475 0.66 0.715245
Target:  5'- gGUAcCGCCGCC-GCAUGuuGCaccacGGCCCg -3'
miRNA:   3'- aCGU-GCGGCGGaCGUAUu-CG-----UCGGGg -5'
6968 5' -58.6 NC_001875.2 + 31913 0.66 0.725205
Target:  5'- -cUugGCCGCgCUGCAccgcgcGCGGgCCCg -3'
miRNA:   3'- acGugCGGCG-GACGUauu---CGUCgGGG- -5'
6968 5' -58.6 NC_001875.2 + 68161 0.66 0.715245
Target:  5'- gUGCGCGCC-CCU-CAuUAAGCAGUgCUc -3'
miRNA:   3'- -ACGUGCGGcGGAcGU-AUUCGUCGgGG- -5'
6968 5' -58.6 NC_001875.2 + 33363 0.66 0.744874
Target:  5'- cGCACGCgGCagucGCAaaagAAGCAGgCCg -3'
miRNA:   3'- aCGUGCGgCGga--CGUa---UUCGUCgGGg -5'
6968 5' -58.6 NC_001875.2 + 61942 0.66 0.744874
Target:  5'- aGCGCGCCGCguUUGUcgAccGGCGcGCCUa -3'
miRNA:   3'- aCGUGCGGCG--GACGuaU--UCGU-CGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.