miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6968 5' -58.6 NC_001875.2 + 99274 0.73 0.336787
Target:  5'- gUGCGCGCgGCaCUGCu---GCAGCCgCu -3'
miRNA:   3'- -ACGUGCGgCG-GACGuauuCGUCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 4441 0.74 0.286579
Target:  5'- cGCGCGCCGCCaGCAcuuuGGCcaGGCUCUg -3'
miRNA:   3'- aCGUGCGGCGGaCGUau--UCG--UCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 95713 0.74 0.307343
Target:  5'- gGCGCGCUGaaaCgcgaagUGCAUGAGCGGCgCCg -3'
miRNA:   3'- aCGUGCGGCg--G------ACGUAUUCGUCGgGG- -5'
6968 5' -58.6 NC_001875.2 + 23092 0.74 0.307343
Target:  5'- -cCGCGCCGCgUGC---AGCuGCCCCg -3'
miRNA:   3'- acGUGCGGCGgACGuauUCGuCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 111800 0.74 0.314515
Target:  5'- gUGCACGCgGCCgacgGCGccuGGCuGCUCCg -3'
miRNA:   3'- -ACGUGCGgCGGa---CGUau-UCGuCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 109100 0.74 0.314515
Target:  5'- uUGCugGCCGCCauugaggGUAUAGGCGGCg-- -3'
miRNA:   3'- -ACGugCGGCGGa------CGUAUUCGUCGggg -5'
6968 5' -58.6 NC_001875.2 + 3835 0.74 0.314515
Target:  5'- cGCACGCCGgC-GCGgccGCAGCCuCCa -3'
miRNA:   3'- aCGUGCGGCgGaCGUauuCGUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 31706 0.74 0.321813
Target:  5'- uUGCGCGCCGCCggcGCAUuacuuucggcgAAGuUGGCCCg -3'
miRNA:   3'- -ACGUGCGGCGGa--CGUA-----------UUC-GUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 110273 0.73 0.329237
Target:  5'- gGCugGCCGCggagcGCGcGGGCuGCCCCg -3'
miRNA:   3'- aCGugCGGCGga---CGUaUUCGuCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 58172 0.74 0.286579
Target:  5'- aGCA-GCCGCC-GCAgcAGCAGCCgCa -3'
miRNA:   3'- aCGUgCGGCGGaCGUauUCGUCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 12302 0.74 0.286579
Target:  5'- gGCACGCCGCCgugUGCGUGGucaacGC-GCCCg -3'
miRNA:   3'- aCGUGCGGCGG---ACGUAUU-----CGuCGGGg -5'
6968 5' -58.6 NC_001875.2 + 66304 0.75 0.260635
Target:  5'- aUGCGCgGCCGgCgaguugaugGCGUGGGCGGCCgCCg -3'
miRNA:   3'- -ACGUG-CGGCgGa--------CGUAUUCGUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 42436 0.82 0.094003
Target:  5'- aGCACGCaaaCGCCUGCGUcAGCGGCCgCu -3'
miRNA:   3'- aCGUGCG---GCGGACGUAuUCGUCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 47715 0.79 0.150637
Target:  5'- gUGCACGaCUGCCUGCugcuUGAGCcGGCgCCCa -3'
miRNA:   3'- -ACGUGC-GGCGGACGu---AUUCG-UCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 20655 0.78 0.169883
Target:  5'- cGCGCGCCGCCcagcGCGcccaagaaaaucgcUAAGCAGCgCCg -3'
miRNA:   3'- aCGUGCGGCGGa---CGU--------------AUUCGUCGgGG- -5'
6968 5' -58.6 NC_001875.2 + 84371 0.78 0.180082
Target:  5'- gGUGCGCgGCCUGCcgGGGCGGCgUCg -3'
miRNA:   3'- aCGUGCGgCGGACGuaUUCGUCGgGG- -5'
6968 5' -58.6 NC_001875.2 + 40438 0.78 0.180082
Target:  5'- cGCGCGCCaUCgagaaCGUGGGCAGCCCCg -3'
miRNA:   3'- aCGUGCGGcGGac---GUAUUCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 131073 0.77 0.184684
Target:  5'- cGCGCGCCGCC-GUc--AGCuGCCCCa -3'
miRNA:   3'- aCGUGCGGCGGaCGuauUCGuCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 48518 0.77 0.199115
Target:  5'- gGCGCGCCGCCcgGCGc--GC-GCCCCg -3'
miRNA:   3'- aCGUGCGGCGGa-CGUauuCGuCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 90389 0.76 0.219877
Target:  5'- cGCGCGCCgcaaccggcGCCUGUgcgcgcgcAGCGGCCCCu -3'
miRNA:   3'- aCGUGCGG---------CGGACGuau-----UCGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.