miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6968 5' -58.6 NC_001875.2 + 634 0.68 0.602932
Target:  5'- aGCGCGC--CCUGCGUuuGCAGCgUCu -3'
miRNA:   3'- aCGUGCGgcGGACGUAuuCGUCGgGG- -5'
6968 5' -58.6 NC_001875.2 + 1085 0.67 0.705213
Target:  5'- -uCGCGaCGCCUGUAUuuauacccAGCGcGCCCCu -3'
miRNA:   3'- acGUGCgGCGGACGUAu-------UCGU-CGGGG- -5'
6968 5' -58.6 NC_001875.2 + 1383 0.67 0.705213
Target:  5'- gGCGCG-UGCUagcggUGCGUcAGCGGCgCCCu -3'
miRNA:   3'- aCGUGCgGCGG-----ACGUAuUCGUCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 1782 0.67 0.695119
Target:  5'- aGCAUGCCGCC-GCc---GCcGCCgCCa -3'
miRNA:   3'- aCGUGCGGCGGaCGuauuCGuCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 1869 0.68 0.633749
Target:  5'- aGCAUGCCGCCgccGCcgccGCcGCCgCCg -3'
miRNA:   3'- aCGUGCGGCGGa--CGuauuCGuCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 2293 0.69 0.532105
Target:  5'- aUGCGCGCgCGCCgugGCcgcgcGCAGCUCg -3'
miRNA:   3'- -ACGUGCG-GCGGa--CGuauu-CGUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 2948 0.67 0.695119
Target:  5'- cGCugGCgCGCUUGCuc-GGCAGCg-- -3'
miRNA:   3'- aCGugCG-GCGGACGuauUCGUCGggg -5'
6968 5' -58.6 NC_001875.2 + 3015 0.74 0.324768
Target:  5'- gUGCGCGUCGCCgUGCAaguuguacacgccguUGGGCAGCgCg -3'
miRNA:   3'- -ACGUGCGGCGG-ACGU---------------AUUCGUCGgGg -5'
6968 5' -58.6 NC_001875.2 + 3835 0.74 0.314515
Target:  5'- cGCACGCCGgC-GCGgccGCAGCCuCCa -3'
miRNA:   3'- aCGUGCGGCgGaCGUauuCGUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 4441 0.74 0.286579
Target:  5'- cGCGCGCCGCCaGCAcuuuGGCcaGGCUCUg -3'
miRNA:   3'- aCGUGCGGCGGaCGUau--UCG--UCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 4528 0.66 0.725205
Target:  5'- gGCGCaCCGCCgGCu---GCGGUUCCu -3'
miRNA:   3'- aCGUGcGGCGGaCGuauuCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 4557 0.71 0.445999
Target:  5'- uUGgGgGCCGCCaGCAacgcGAGCAGCCgCa -3'
miRNA:   3'- -ACgUgCGGCGGaCGUa---UUCGUCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 4765 0.68 0.602932
Target:  5'- aUGCugGCCGCCguugGCc---GCGGCUUUg -3'
miRNA:   3'- -ACGugCGGCGGa---CGuauuCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 7244 0.67 0.664553
Target:  5'- aUGCACuuuCCGCgCUGC---AGCGGCCUg -3'
miRNA:   3'- -ACGUGc--GGCG-GACGuauUCGUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 7349 0.67 0.67478
Target:  5'- aUGCACcuuGuaGCCUGCGgu-GCAGUgCCCg -3'
miRNA:   3'- -ACGUG---CggCGGACGUauuCGUCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 7550 0.66 0.754563
Target:  5'- cGCaACGaccugaCGCCgGCGgacGAGCGGCaCCCc -3'
miRNA:   3'- aCG-UGCg-----GCGGaCGUa--UUCGUCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 7589 0.67 0.705213
Target:  5'- -aCGCGCCGCCUGuCGUcauuguGCcGCCgCCc -3'
miRNA:   3'- acGUGCGGCGGAC-GUAuu----CGuCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 8498 0.67 0.664553
Target:  5'- cGgGCGCCGUCcGUGUGGGC-GCCgCg -3'
miRNA:   3'- aCgUGCGGCGGaCGUAUUCGuCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 9309 0.66 0.735084
Target:  5'- cUGCGCGCCGgaCgcaaucgGCG-AAGCuGCCCg -3'
miRNA:   3'- -ACGUGCGGCg-Ga------CGUaUUCGuCGGGg -5'
6968 5' -58.6 NC_001875.2 + 9927 0.66 0.725205
Target:  5'- cGCGgGCCGCaaGUAUucuAGCGGUgcugCCCa -3'
miRNA:   3'- aCGUgCGGCGgaCGUAu--UCGUCG----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.