Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6977 | 5' | -60.1 | NC_001875.2 | + | 127823 | 0.66 | 0.727996 |
Target: 5'- -cGCUGGAgcAGUCaGACGGGCgCGgCGu -3' miRNA: 3'- caUGACCUacUCGG-CUGCCCG-GCgGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 37102 | 0.66 | 0.718298 |
Target: 5'- -cGCgUGGGUGuGCgGGCGcGGCgccgCGCCGg -3' miRNA: 3'- caUG-ACCUACuCGgCUGC-CCG----GCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 123008 | 0.66 | 0.708529 |
Target: 5'- -aGCUGaAUGAGuuGGuguUGGGCgCGCCGc -3' miRNA: 3'- caUGACcUACUCggCU---GCCCG-GCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 48019 | 0.66 | 0.698699 |
Target: 5'- cGUGgUGGc--GGCCcACGuGGCCGCCGc -3' miRNA: 3'- -CAUgACCuacUCGGcUGC-CCGGCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 102382 | 0.66 | 0.698699 |
Target: 5'- --uUUGGAgccGAGCCGcauGGCCGCCa -3' miRNA: 3'- cauGACCUa--CUCGGCugcCCGGCGGc -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 83577 | 0.66 | 0.678883 |
Target: 5'- -cACaUGaGGUGucCCGGCGGGgCGCCGc -3' miRNA: 3'- caUG-AC-CUACucGGCUGCCCgGCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 3169 | 0.67 | 0.668917 |
Target: 5'- -gGCgaguaGGUGAGCCGGCGG-CCGCg- -3' miRNA: 3'- caUGac---CUACUCGGCUGCCcGGCGgc -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 79797 | 0.67 | 0.668917 |
Target: 5'- ----aGGgcGGGUCGuCGGGCCGCUu -3' miRNA: 3'- caugaCCuaCUCGGCuGCCCGGCGGc -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 93260 | 0.67 | 0.658921 |
Target: 5'- -aGCUGGcccguGUaGAGCagGAUGGGCaCGCCGc -3' miRNA: 3'- caUGACC-----UA-CUCGg-CUGCCCG-GCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 9552 | 0.67 | 0.648905 |
Target: 5'- -gGCUGG-UGAGCgGAuaUGaGGCCgGCCGa -3' miRNA: 3'- caUGACCuACUCGgCU--GC-CCGG-CGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 17664 | 0.67 | 0.635866 |
Target: 5'- -cGCUGGcgGugaagcuggcguuuAGCCGACGcGGCUGCg- -3' miRNA: 3'- caUGACCuaC--------------UCGGCUGC-CCGGCGgc -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 49330 | 0.67 | 0.632855 |
Target: 5'- -aACUGGcacaguuccugcagcGUGGG-CGGCGGGCCGUgGu -3' miRNA: 3'- caUGACC---------------UACUCgGCUGCCCGGCGgC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 29918 | 0.67 | 0.628842 |
Target: 5'- cUGCUGGAcacGuuGACaagGGGCCGCCc -3' miRNA: 3'- cAUGACCUacuCggCUG---CCCGGCGGc -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 89289 | 0.67 | 0.628842 |
Target: 5'- -cACaGGGUGuaguGGCCGcAUGGcGCCGCCa -3' miRNA: 3'- caUGaCCUAC----UCGGC-UGCC-CGGCGGc -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 117354 | 0.67 | 0.61881 |
Target: 5'- -aACcGGcgG-GCCGGCuGGCCGUCGg -3' miRNA: 3'- caUGaCCuaCuCGGCUGcCCGGCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 23327 | 0.68 | 0.608788 |
Target: 5'- uUGCUGGGcggaaagGAGCaCGACGGcggguuGCaCGCCGg -3' miRNA: 3'- cAUGACCUa------CUCG-GCUGCC------CG-GCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 108236 | 0.68 | 0.598783 |
Target: 5'- --uUUGGAcGAGCgCGucaACGGGCUGCUGg -3' miRNA: 3'- cauGACCUaCUCG-GC---UGCCCGGCGGC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 35884 | 0.68 | 0.598783 |
Target: 5'- ---aUGGAauUGAGCCGGCGcGuuGCCa -3' miRNA: 3'- caugACCU--ACUCGGCUGCcCggCGGc -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 37576 | 0.68 | 0.565968 |
Target: 5'- -gAgUGGAUGcGCCGGCGcgagcgccgcggccGGCCGCaCGg -3' miRNA: 3'- caUgACCUACuCGGCUGC--------------CCGGCG-GC- -5' |
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6977 | 5' | -60.1 | NC_001875.2 | + | 77092 | 0.69 | 0.529761 |
Target: 5'- -cGCUGGcgGuGCCGGCGGuG-CGCCc -3' miRNA: 3'- caUGACCuaCuCGGCUGCC-CgGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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