miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 5' -60.1 NC_001875.2 + 127823 0.66 0.727996
Target:  5'- -cGCUGGAgcAGUCaGACGGGCgCGgCGu -3'
miRNA:   3'- caUGACCUacUCGG-CUGCCCG-GCgGC- -5'
6977 5' -60.1 NC_001875.2 + 123008 0.66 0.708529
Target:  5'- -aGCUGaAUGAGuuGGuguUGGGCgCGCCGc -3'
miRNA:   3'- caUGACcUACUCggCU---GCCCG-GCGGC- -5'
6977 5' -60.1 NC_001875.2 + 122738 0.73 0.310129
Target:  5'- -aGCUGGAUGuuuGGCUGugGaacGCCGCCGa -3'
miRNA:   3'- caUGACCUAC---UCGGCugCc--CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 117354 0.67 0.61881
Target:  5'- -aACcGGcgG-GCCGGCuGGCCGUCGg -3'
miRNA:   3'- caUGaCCuaCuCGGCUGcCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 110273 0.7 0.482279
Target:  5'- -gGCUGGccgcgGAGCgCG-CGGGCUGCCc -3'
miRNA:   3'- caUGACCua---CUCG-GCuGCCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 109000 0.73 0.32434
Target:  5'- -gGCUGGAcgcguacgucgUGccGCCGACGGuGCCGUCGg -3'
miRNA:   3'- caUGACCU-----------ACu-CGGCUGCC-CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 108236 0.68 0.598783
Target:  5'- --uUUGGAcGAGCgCGucaACGGGCUGCUGg -3'
miRNA:   3'- cauGACCUaCUCG-GC---UGCCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 104484 0.69 0.501041
Target:  5'- cGUGCUGG-UGAGCCGcaugauGCGaGCCGgCGa -3'
miRNA:   3'- -CAUGACCuACUCGGC------UGCcCGGCgGC- -5'
6977 5' -60.1 NC_001875.2 + 102382 0.66 0.698699
Target:  5'- --uUUGGAgccGAGCCGcauGGCCGCCa -3'
miRNA:   3'- cauGACCUa--CUCGGCugcCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 100042 0.71 0.403349
Target:  5'- -cGCUGGuuuugcuguuugugGAGCUGACGGuGCUGCUGg -3'
miRNA:   3'- caUGACCua------------CUCGGCUGCC-CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 93260 0.67 0.658921
Target:  5'- -aGCUGGcccguGUaGAGCagGAUGGGCaCGCCGc -3'
miRNA:   3'- caUGACC-----UA-CUCGg-CUGCCCG-GCGGC- -5'
6977 5' -60.1 NC_001875.2 + 90884 0.69 0.52686
Target:  5'- cGUGCUGGccgGGGCCgcgucgggcauguuGACGGGCacgcaGCCu -3'
miRNA:   3'- -CAUGACCua-CUCGG--------------CUGCCCGg----CGGc -5'
6977 5' -60.1 NC_001875.2 + 90700 0.74 0.270359
Target:  5'- ---aUGGGguuGCCGGCGcGGCCGCCGg -3'
miRNA:   3'- caugACCUacuCGGCUGC-CCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 89289 0.67 0.628842
Target:  5'- -cACaGGGUGuaguGGCCGcAUGGcGCCGCCa -3'
miRNA:   3'- caUGaCCUAC----UCGGC-UGCC-CGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 85197 1.07 0.001383
Target:  5'- aGUACUGGAUGAGCCGACGGGCCGCCGc -3'
miRNA:   3'- -CAUGACCUACUCGGCUGCCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 83577 0.66 0.678883
Target:  5'- -cACaUGaGGUGucCCGGCGGGgCGCCGc -3'
miRNA:   3'- caUG-AC-CUACucGGCUGCCCgGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 82188 0.7 0.463864
Target:  5'- cGUGCUcGAUGGgcGCCGGCGGccgcucgugucGCCGCUGg -3'
miRNA:   3'- -CAUGAcCUACU--CGGCUGCC-----------CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 79797 0.67 0.668917
Target:  5'- ----aGGgcGGGUCGuCGGGCCGCUu -3'
miRNA:   3'- caugaCCuaCUCGGCuGCCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 77092 0.69 0.529761
Target:  5'- -cGCUGGcgGuGCCGGCGGuG-CGCCc -3'
miRNA:   3'- caUGACCuaCuCGGCUGCC-CgGCGGc -5'
6977 5' -60.1 NC_001875.2 + 74139 0.69 0.529761
Target:  5'- -aGCUGGAguucgaGGGCgCGGCGcccGCCGCCGc -3'
miRNA:   3'- caUGACCUa-----CUCG-GCUGCc--CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.