miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6979 3' -49.5 NC_001875.2 + 87037 1.07 0.010339
Target:  5'- aUUUGCGCUUCAAAGCGCACGUGUUCAa -3'
miRNA:   3'- -AAACGCGAAGUUUCGCGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 98933 0.85 0.266011
Target:  5'- gUUGCGCgugcgCGAcGCGCGCGUGUUCAg -3'
miRNA:   3'- aAACGCGaa---GUUuCGCGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 6439 0.78 0.554433
Target:  5'- aUUUGCGCgccgUCGuaguAGCGCGCgGUGUUCGu -3'
miRNA:   3'- -AAACGCGa---AGUu---UCGCGUG-CACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 23005 0.75 0.718706
Target:  5'- --cGCGUUUUggGcGCGCAcCGUGUUCAg -3'
miRNA:   3'- aaaCGCGAAGuuU-CGCGU-GCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 50000 0.72 0.863304
Target:  5'- --gGCGCUugucgcggUUggGGCGCGCGUGgUCGc -3'
miRNA:   3'- aaaCGCGA--------AGuuUCGCGUGCACaAGU- -5'
6979 3' -49.5 NC_001875.2 + 34215 0.72 0.863304
Target:  5'- --cGCGUUUUcu-GCGCACGUGUUUu -3'
miRNA:   3'- aaaCGCGAAGuuuCGCGUGCACAAGu -5'
6979 3' -49.5 NC_001875.2 + 59903 0.72 0.871349
Target:  5'- -cUGCGCg-CGGAGCGCGCGg--UCAa -3'
miRNA:   3'- aaACGCGaaGUUUCGCGUGCacaAGU- -5'
6979 3' -49.5 NC_001875.2 + 8832 0.71 0.88445
Target:  5'- --cGCGCccaacaccaacucaUUCAGcuGGCGCACGUGUUg- -3'
miRNA:   3'- aaaCGCG--------------AAGUU--UCGCGUGCACAAgu -5'
6979 3' -49.5 NC_001875.2 + 66357 0.71 0.910332
Target:  5'- --gGCGCgcauccagucggcgUCGAGGUucgaGCACGUGUUCGa -3'
miRNA:   3'- aaaCGCGa-------------AGUUUCG----CGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 53500 0.71 0.914178
Target:  5'- --cGCGC-UCAAggacucGGUGCGCGUGUUUu -3'
miRNA:   3'- aaaCGCGaAGUU------UCGCGUGCACAAGu -5'
6979 3' -49.5 NC_001875.2 + 81711 0.7 0.920367
Target:  5'- --gGCGCUggaAGAGCGCuACGUGcgcgUCAa -3'
miRNA:   3'- aaaCGCGAag-UUUCGCG-UGCACa---AGU- -5'
6979 3' -49.5 NC_001875.2 + 40223 0.7 0.926279
Target:  5'- --gGCGCcggCGAAaCGCGCGUGUUUAg -3'
miRNA:   3'- aaaCGCGaa-GUUUcGCGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 98615 0.7 0.931911
Target:  5'- --aGCGCgccacgUCGGAGCcCGCGUGUUUu -3'
miRNA:   3'- aaaCGCGa-----AGUUUCGcGUGCACAAGu -5'
6979 3' -49.5 NC_001875.2 + 63696 0.7 0.937266
Target:  5'- --gGCGCgcaCGAGGUGCGCGUGa--- -3'
miRNA:   3'- aaaCGCGaa-GUUUCGCGUGCACaagu -5'
6979 3' -49.5 NC_001875.2 + 100873 0.7 0.942343
Target:  5'- --aGCGCgaggcgCAgcGCGCGCGUGggCGc -3'
miRNA:   3'- aaaCGCGaa----GUuuCGCGUGCACaaGU- -5'
6979 3' -49.5 NC_001875.2 + 130577 0.7 0.942343
Target:  5'- --aGCGCUUCAAuGCGCGCcaaaacacUGUUUAa -3'
miRNA:   3'- aaaCGCGAAGUUuCGCGUGc-------ACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 47307 0.69 0.951677
Target:  5'- uUUUGCGCgcuucUUCAAAGaugaCGCACGUGcugUCGg -3'
miRNA:   3'- -AAACGCG-----AAGUUUC----GCGUGCACa--AGU- -5'
6979 3' -49.5 NC_001875.2 + 10997 0.69 0.951677
Target:  5'- --aGCGCUgc-AGGCGCGCGUGccCAu -3'
miRNA:   3'- aaaCGCGAaguUUCGCGUGCACaaGU- -5'
6979 3' -49.5 NC_001875.2 + 6732 0.69 0.95594
Target:  5'- aUUGCGCUcgCuu-GUGCGCGUGUa-- -3'
miRNA:   3'- aAACGCGAa-GuuuCGCGUGCACAagu -5'
6979 3' -49.5 NC_001875.2 + 42197 0.69 0.963683
Target:  5'- --gGCGUUUCAAauAGCGCGCGgcggCAc -3'
miRNA:   3'- aaaCGCGAAGUU--UCGCGUGCacaaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.