miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6979 3' -49.5 NC_001875.2 + 227 0.66 0.99138
Target:  5'- --cGCGCgccaUCAAAuuGCGCACGUuuUUCAg -3'
miRNA:   3'- aaaCGCGa---AGUUU--CGCGUGCAc-AAGU- -5'
6979 3' -49.5 NC_001875.2 + 6439 0.78 0.554433
Target:  5'- aUUUGCGCgccgUCGuaguAGCGCGCgGUGUUCGu -3'
miRNA:   3'- -AAACGCGa---AGUu---UCGCGUG-CACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 6732 0.69 0.95594
Target:  5'- aUUGCGCUcgCuu-GUGCGCGUGUa-- -3'
miRNA:   3'- aAACGCGAa-GuuuCGCGUGCACAagu -5'
6979 3' -49.5 NC_001875.2 + 8832 0.71 0.88445
Target:  5'- --cGCGCccaacaccaacucaUUCAGcuGGCGCACGUGUUg- -3'
miRNA:   3'- aaaCGCG--------------AAGUU--UCGCGUGCACAAgu -5'
6979 3' -49.5 NC_001875.2 + 9727 0.67 0.983277
Target:  5'- --cGCGCc-CGAAGCgugGCACGUGUUgAg -3'
miRNA:   3'- aaaCGCGaaGUUUCG---CGUGCACAAgU- -5'
6979 3' -49.5 NC_001875.2 + 9979 0.66 0.99138
Target:  5'- --cGCGUguaCAGGGCGUACGUGc--- -3'
miRNA:   3'- aaaCGCGaa-GUUUCGCGUGCACaagu -5'
6979 3' -49.5 NC_001875.2 + 10997 0.69 0.951677
Target:  5'- --aGCGCUgc-AGGCGCGCGUGccCAu -3'
miRNA:   3'- aaaCGCGAaguUUCGCGUGCACaaGU- -5'
6979 3' -49.5 NC_001875.2 + 11567 0.68 0.978774
Target:  5'- --cGCGCUUCAucGCGC-UGcGUUCc -3'
miRNA:   3'- aaaCGCGAAGUuuCGCGuGCaCAAGu -5'
6979 3' -49.5 NC_001875.2 + 23005 0.75 0.718706
Target:  5'- --cGCGUUUUggGcGCGCAcCGUGUUCAg -3'
miRNA:   3'- aaaCGCGAAGuuU-CGCGU-GCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 28672 0.67 0.985238
Target:  5'- --gGCGUgggCGAcauGGCGUACGUGUUg- -3'
miRNA:   3'- aaaCGCGaa-GUU---UCGCGUGCACAAgu -5'
6979 3' -49.5 NC_001875.2 + 34215 0.72 0.863304
Target:  5'- --cGCGUUUUcu-GCGCACGUGUUUu -3'
miRNA:   3'- aaaCGCGAAGuuuCGCGUGCACAAGu -5'
6979 3' -49.5 NC_001875.2 + 34740 0.66 0.992321
Target:  5'- --cGCGCaaaucgugguugUCAAGcCGUGCGUGUUCAa -3'
miRNA:   3'- aaaCGCGa-----------AGUUUcGCGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 34903 0.68 0.978774
Target:  5'- --aGCGCgagaUCAAGGCGCGCcaGUUUu -3'
miRNA:   3'- aaaCGCGa---AGUUUCGCGUGcaCAAGu -5'
6979 3' -49.5 NC_001875.2 + 38274 0.66 0.992543
Target:  5'- --aGCGCcUCGcAGCGCGCGUa---- -3'
miRNA:   3'- aaaCGCGaAGUuUCGCGUGCAcaagu -5'
6979 3' -49.5 NC_001875.2 + 38384 0.67 0.985238
Target:  5'- --gGCGCUgaCAAAGUGCGCGgccaUGUUUc -3'
miRNA:   3'- aaaCGCGAa-GUUUCGCGUGC----ACAAGu -5'
6979 3' -49.5 NC_001875.2 + 40223 0.7 0.926279
Target:  5'- --gGCGCcggCGAAaCGCGCGUGUUUAg -3'
miRNA:   3'- aaaCGCGaa-GUUUcGCGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 42052 0.66 0.993577
Target:  5'- --cGCGCUgCGuucGCGCACGUGcaCGa -3'
miRNA:   3'- aaaCGCGAaGUuu-CGCGUGCACaaGU- -5'
6979 3' -49.5 NC_001875.2 + 42197 0.69 0.963683
Target:  5'- --gGCGUUUCAAauAGCGCGCGgcggCAc -3'
miRNA:   3'- aaaCGCGAAGUU--UCGCGUGCacaaGU- -5'
6979 3' -49.5 NC_001875.2 + 44133 0.66 0.990079
Target:  5'- gUUUGCGUccgCGGAGCGCuuucCGUGUccgCAa -3'
miRNA:   3'- -AAACGCGaa-GUUUCGCGu---GCACAa--GU- -5'
6979 3' -49.5 NC_001875.2 + 44809 0.67 0.987018
Target:  5'- -gUGCGCUUUGAAGCGCAaaUGc--- -3'
miRNA:   3'- aaACGCGAAGUUUCGCGUgcACaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.