Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6979 | 3' | -49.5 | NC_001875.2 | + | 227 | 0.66 | 0.99138 |
Target: 5'- --cGCGCgccaUCAAAuuGCGCACGUuuUUCAg -3' miRNA: 3'- aaaCGCGa---AGUUU--CGCGUGCAc-AAGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 96058 | 0.68 | 0.978774 |
Target: 5'- gUUUGCGCgccaucacgggUCAAaaGGUGCACGUGa--- -3' miRNA: 3'- -AAACGCGa----------AGUU--UCGCGUGCACaagu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 82738 | 0.67 | 0.981126 |
Target: 5'- --aGCGCUUUAc-GCGCACGUaGUagUCGu -3' miRNA: 3'- aaaCGCGAAGUuuCGCGUGCA-CA--AGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 117284 | 0.67 | 0.981126 |
Target: 5'- -aUGCGCUUCAcgauGGC-CGCGUGcgCc -3' miRNA: 3'- aaACGCGAAGUu---UCGcGUGCACaaGu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 77624 | 0.67 | 0.983277 |
Target: 5'- gUUGUGCUUCAccGUcgacggccuGCACGUGUg-- -3' miRNA: 3'- aAACGCGAAGUuuCG---------CGUGCACAagu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 38384 | 0.67 | 0.985238 |
Target: 5'- --gGCGCUgaCAAAGUGCGCGgccaUGUUUc -3' miRNA: 3'- aaaCGCGAa-GUUUCGCGUGC----ACAAGu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 108903 | 0.67 | 0.985238 |
Target: 5'- --cGCGCcUCAAcGCGUugGUGgaCGa -3' miRNA: 3'- aaaCGCGaAGUUuCGCGugCACaaGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 123329 | 0.66 | 0.990079 |
Target: 5'- --cGCGCaggCAGAGCGCACGc----- -3' miRNA: 3'- aaaCGCGaa-GUUUCGCGUGCacaagu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 9979 | 0.66 | 0.99138 |
Target: 5'- --cGCGUguaCAGGGCGUACGUGc--- -3' miRNA: 3'- aaaCGCGaa-GUUUCGCGUGCACaagu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 72756 | 0.68 | 0.978774 |
Target: 5'- -gUGCGCUcCAAcGCGCGUGUGUcgcccUCAa -3' miRNA: 3'- aaACGCGAaGUUuCGCGUGCACA-----AGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 34903 | 0.68 | 0.978774 |
Target: 5'- --aGCGCgagaUCAAGGCGCGCcaGUUUu -3' miRNA: 3'- aaaCGCGa---AGUUUCGCGUGcaCAAGu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 42197 | 0.69 | 0.963683 |
Target: 5'- --gGCGUUUCAAauAGCGCGCGgcggCAc -3' miRNA: 3'- aaaCGCGAAGUU--UCGCGUGCacaaGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 6439 | 0.78 | 0.554433 |
Target: 5'- aUUUGCGCgccgUCGuaguAGCGCGCgGUGUUCGu -3' miRNA: 3'- -AAACGCGa---AGUu---UCGCGUG-CACAAGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 34215 | 0.72 | 0.863304 |
Target: 5'- --cGCGUUUUcu-GCGCACGUGUUUu -3' miRNA: 3'- aaaCGCGAAGuuuCGCGUGCACAAGu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 50000 | 0.72 | 0.863304 |
Target: 5'- --gGCGCUugucgcggUUggGGCGCGCGUGgUCGc -3' miRNA: 3'- aaaCGCGA--------AGuuUCGCGUGCACaAGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 8832 | 0.71 | 0.88445 |
Target: 5'- --cGCGCccaacaccaacucaUUCAGcuGGCGCACGUGUUg- -3' miRNA: 3'- aaaCGCG--------------AAGUU--UCGCGUGCACAAgu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 98615 | 0.7 | 0.931911 |
Target: 5'- --aGCGCgccacgUCGGAGCcCGCGUGUUUu -3' miRNA: 3'- aaaCGCGa-----AGUUUCGcGUGCACAAGu -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 10997 | 0.69 | 0.951677 |
Target: 5'- --aGCGCUgc-AGGCGCGCGUGccCAu -3' miRNA: 3'- aaaCGCGAaguUUCGCGUGCACaaGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 47307 | 0.69 | 0.951677 |
Target: 5'- uUUUGCGCgcuucUUCAAAGaugaCGCACGUGcugUCGg -3' miRNA: 3'- -AAACGCG-----AAGUUUC----GCGUGCACa--AGU- -5' |
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6979 | 3' | -49.5 | NC_001875.2 | + | 6732 | 0.69 | 0.95594 |
Target: 5'- aUUGCGCUcgCuu-GUGCGCGUGUa-- -3' miRNA: 3'- aAACGCGAa-GuuuCGCGUGCACAagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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