miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6979 5' -55.6 NC_001875.2 + 23457 0.66 0.90965
Target:  5'- aUCCcGACaauugCGUGUacaaguuugcguugACCGUGUUGGGCCa -3'
miRNA:   3'- -AGGuCUG-----GCACG--------------UGGCGCAACUUGGa -5'
6979 5' -55.6 NC_001875.2 + 112824 0.66 0.905314
Target:  5'- gCCGcGCaCGUGCAaagCGCGUUGcGGCCUg -3'
miRNA:   3'- aGGUcUG-GCACGUg--GCGCAAC-UUGGA- -5'
6979 5' -55.6 NC_001875.2 + 124773 0.66 0.905314
Target:  5'- -aCAGGCCGgugGCgucGCCGCaGcgGAACCa -3'
miRNA:   3'- agGUCUGGCa--CG---UGGCG-CaaCUUGGa -5'
6979 5' -55.6 NC_001875.2 + 16768 0.66 0.905314
Target:  5'- gUCguGACUGcGCGCCGCGUaaAGCUUc -3'
miRNA:   3'- -AGguCUGGCaCGUGGCGCAacUUGGA- -5'
6979 5' -55.6 NC_001875.2 + 29111 0.66 0.901504
Target:  5'- cUUCAGACCGccgucgcagcaaaaGCACCGCGUcuUGucGCCc -3'
miRNA:   3'- -AGGUCUGGCa-------------CGUGGCGCA--ACu-UGGa -5'
6979 5' -55.6 NC_001875.2 + 54175 0.66 0.898916
Target:  5'- cUCGGACagcgGCGCUGCGUUGGcguccACCa -3'
miRNA:   3'- aGGUCUGgca-CGUGGCGCAACU-----UGGa -5'
6979 5' -55.6 NC_001875.2 + 78654 0.66 0.898916
Target:  5'- gUCgAGGCCGUGCAa-GCGUccaUGA-CCg -3'
miRNA:   3'- -AGgUCUGGCACGUggCGCA---ACUuGGa -5'
6979 5' -55.6 NC_001875.2 + 70013 0.66 0.892282
Target:  5'- -gCAGGaaaaCGUGCGCCGUGUUGGc--- -3'
miRNA:   3'- agGUCUg---GCACGUGGCGCAACUugga -5'
6979 5' -55.6 NC_001875.2 + 121483 0.66 0.885414
Target:  5'- gCCAGGCCGUaGC-CCgGCGcaauUUGAAUCa -3'
miRNA:   3'- aGGUCUGGCA-CGuGG-CGC----AACUUGGa -5'
6979 5' -55.6 NC_001875.2 + 31912 0.66 0.885414
Target:  5'- aCUuGGCCGcgcUGCACCGCGcgcGGGCCc -3'
miRNA:   3'- aGGuCUGGC---ACGUGGCGCaa-CUUGGa -5'
6979 5' -55.6 NC_001875.2 + 5134 0.66 0.878317
Target:  5'- gUCCgcGGA-CGUGCGCCGCuucggguuuUUGAGCCg -3'
miRNA:   3'- -AGG--UCUgGCACGUGGCGc--------AACUUGGa -5'
6979 5' -55.6 NC_001875.2 + 91953 0.66 0.878317
Target:  5'- gUCCGGGCUaugGUGCAgCGCGUcgcccGGGCUg -3'
miRNA:   3'- -AGGUCUGG---CACGUgGCGCAa----CUUGGa -5'
6979 5' -55.6 NC_001875.2 + 98033 0.67 0.870996
Target:  5'- cCCGcgcGCCGUGCGCCGaCGggcaagUGcGCCUa -3'
miRNA:   3'- aGGUc--UGGCACGUGGC-GCa-----ACuUGGA- -5'
6979 5' -55.6 NC_001875.2 + 78033 0.67 0.870996
Target:  5'- cUCCuGGCgGUGC-CgGCGUUGAugUUc -3'
miRNA:   3'- -AGGuCUGgCACGuGgCGCAACUugGA- -5'
6979 5' -55.6 NC_001875.2 + 118323 0.67 0.855703
Target:  5'- gCCGG-CCGcGCGCUGCagGUgaUGAACCUg -3'
miRNA:   3'- aGGUCuGGCaCGUGGCG--CA--ACUUGGA- -5'
6979 5' -55.6 NC_001875.2 + 110145 0.67 0.855703
Target:  5'- gCUGGACCGcaGCACCGCGUcGcGCUc -3'
miRNA:   3'- aGGUCUGGCa-CGUGGCGCAaCuUGGa -5'
6979 5' -55.6 NC_001875.2 + 45164 0.67 0.847743
Target:  5'- gCCAGguaCGUcuccaGCACCGCGUUGAggucgucggucACCa -3'
miRNA:   3'- aGGUCug-GCA-----CGUGGCGCAACU-----------UGGa -5'
6979 5' -55.6 NC_001875.2 + 85832 0.67 0.847743
Target:  5'- aUCAGcacgUCGUGCACCGCGUuguugUGGugCg -3'
miRNA:   3'- aGGUCu---GGCACGUGGCGCA-----ACUugGa -5'
6979 5' -55.6 NC_001875.2 + 12776 0.68 0.814857
Target:  5'- gUCCAG-CCGggGCGCCGCGcacaugcgcacgccGGACCa -3'
miRNA:   3'- -AGGUCuGGCa-CGUGGCGCaa------------CUUGGa -5'
6979 5' -55.6 NC_001875.2 + 9791 0.69 0.738931
Target:  5'- aUCCGGGCacugcgCGUGCACaguaaCGUUGGGCCg -3'
miRNA:   3'- -AGGUCUG------GCACGUGgc---GCAACUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.